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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.38321 (28 seq.)
>W1710919684
LNXV01000036
Gammaproteobacteria
Legionella brunensis [LNXV]
316860
316772
-
Leu
TAA
[ENA]
¡û
>W1710919697
LNXW01000008
Gammaproteobacteria
Legionella cherrii [LNXW]
34801
34713
-
Leu
TAA
[ENA]
¡û
>W1710919815
LNXZ01000006
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
142908
142996
+
Leu
TAA
[ENA]
¡û
>W1710919932
LNYB01000085
Gammaproteobacteria
Legionella feeleii [LNYB]
809075
809163
+
Leu
TAA
[ENA]
¡û
>W1710920079
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
854036
854124
+
Leu
TAA
[ENA]
¡û
>W1710920163
LNYH01000147
Gammaproteobacteria
Legionella israelensis [LNYH]
127656
127744
+
Leu
TAA
[ENA]
¡û
>W1710920894
LNYZ01000029
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
22490
22578
+
Leu
TAA
[ENA]
¡û
>W141245601
CALJ01000099
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
9113
9201
+
Leu
TAA
[ENA]
¡û
>WENV170370908
CETR01186033
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
550
462
-
Leu
TAA
[ENA]
¢þ
>WENV170634268
FYBJ01000047
[FYBJ] marine metagenome; marine
36119
36031
-
Leu
TAA
[ENA]
¢þ
>C181019736
CP016397
Gammaproteobacteria
Legionella clemsonensis CDC-D5610 [CP016397]
2529764
2529676
-
Leu
TAA
-
¡û
>C191158526
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
2554162
2554250
+
Leu
TAA
-
¡û
>C191159124
CP038273
Gammaproteobacteria
Legionella israelensis Bercovier 4 [CP038273]
2253309
2253221
-
Leu
TAA
-
¡û
>C191198860
LR134173
Gammaproteobacteria
Legionella cherrii NCTC11976 [LR134173]
1491238
1491326
+
Leu
TAA
-
¡û
>W141561517
JHYM01000009
Gammaproteobacteria
Legionella cherrii DSM 19213 [JHYM]
130226
130138
-
Leu
TAA
[ENA]
¡û
>C151103862
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
739872
739960
+
Leu
TAA
[Ensembl]
¡û
>W121021422
AGVT01000006
Gammaproteobacteria
Fluoribacter dumoffii Tex-KL [AGVT]
384346
384434
+
Leu
TAA
[ENA]
¡û
>W121021483
AGVU01000012
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [AGVU]
69506
69418
-
Leu
TAA
[ENA]
¡û
>W1610583911
LBHK01000069
Gammaproteobacteria
Legionella feeleii [LBHK]
679
591
-
Leu
TAA
[ENA]
¡û
>W1610777582
LNXV01000036
Gammaproteobacteria
Legionella brunensis [LNXV]
316860
316772
-
Leu
TAA
[ENA]
¡û
>W1610777595
LNXW01000008
Gammaproteobacteria
Legionella cherrii [LNXW]
34801
34713
-
Leu
TAA
[ENA]
¡û
>W1610777713
LNXZ01000006
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
142908
142996
+
Leu
TAA
[ENA]
¡û
>W1610777830
LNYB01000085
Gammaproteobacteria
Legionella feeleii [LNYB]
809075
809163
+
Leu
TAA
[ENA]
¡û
>W1610777977
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
854036
854124
+
Leu
TAA
[ENA]
¡û
>W1610778061
LNYH01000147
Gammaproteobacteria
Legionella israelensis [LNYH]
127656
127744
+
Leu
TAA
[ENA]
¡û
>W1610778792
LNYZ01000029
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
22490
22578
+
Leu
TAA
[ENA]
¡û
>W1710507472
FMVH01000031
Gammaproteobacteria
Legionella israelensis DSM 19235 [FMVH]
17633
17545
-
Leu
TAA
[ENA]
¡û
>W1710703059
LBHK01000069
Gammaproteobacteria
Legionella feeleii [LBHK]
679
591
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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