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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.38355 (70 seq.)
>W1711135044
LUYM01000020
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
329994
329906
-
Leu
GAG
[ENA]
¡û
>W131206156
ATFL01000015
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
31324
31410
+
Leu
GAG
[ENA]
¡û
>W131230054
AUHH01000012
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
61986
61898
-
Leu
GAG
[ENA]
¡û
>W131230918
AUIA01000008
Actinomycetota
Propionicicella superfundia DSM 22317 [AUIA]
56763
56851
+
Leu
GAG
[ENA]
¡û
>C171130962
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
1002218
1002130
-
Leu
GAG
-
¡û
>WENV180729108
ODGU01200072
[ODGU] human metagenome; G_DNA_Supragingival plaque
273
187
-
Leu
GAG
[ENA]
¢þ
>WENV180734482
ODGZ01009946
[ODGZ] human metagenome; G_DNA_Supragingival plaque
6
92
+
Leu
GAG
[ENA]
¢þ
>WENV180736079
ODHB01004486
[ODHB] human metagenome; G_DNA_Supragingival plaque
2
88
+
Leu
GAG
[ENA]
¢þ
>WENV180751591
ODHS01081591
[ODHS] human metagenome; G_DNA_Supragingival plaque
385
299
-
Leu
GAG
[ENA]
¢þ
>WENV180788487
ODIS01066796
[ODIS] human metagenome; G_DNA_Supragingival plaque
399
485
+
Leu
GAG
[ENA]
¢þ
>WENV180797932
ODJB01169327
[ODJB] human metagenome; G_DNA_Supragingival plaque
303
389
+
Leu
GAG
[ENA]
¢þ
>WENV180801751
ODJD01147223
[ODJD] human metagenome; G_DNA_Supragingival plaque
162
248
+
Leu
GAG
[ENA]
¢þ
>WENV180823059
ODJW01003477
[ODJW] human metagenome; G_DNA_Supragingival plaque
562
648
+
Leu
GAG
[ENA]
¢þ
>WENV180824812
ODJX01057631
[ODJX] human metagenome; G_DNA_Supragingival plaque
111
25
-
Leu
GAG
[ENA]
¢þ
>WENV180832958
ODKC01008782
[ODKC] human metagenome; G_DNA_Supragingival plaque
76
162
+
Leu
GAG
[ENA]
¢þ
>WENV180835773
ODKE01011772
[ODKE] human metagenome; G_DNA_Supragingival plaque
2189
2103
-
Leu
GAG
[ENA]
¢þ
>WENV180843703
ODKN01008573
[ODKN] human metagenome; G_DNA_Supragingival plaque
57
143
+
Leu
GAG
[ENA]
¢þ
>WENV180859546
ODLD01001227
[ODLD] human metagenome; G_DNA_Supragingival plaque
4307
4393
+
Leu
GAG
[ENA]
¢þ
>WENV180922698
ODTJ01008615
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3187
3101
-
Leu
GAG
[ENA]
¢þ
>WENV180924069
ODTK01000968
[ODTK] human metagenome; G_DNA_Supragingival plaque
13725
13811
+
Leu
GAG
[ENA]
¢þ
>WENV180927756
ODTM01003370
[ODTM] human metagenome; G_DNA_Supragingival plaque
5143
5057
-
Leu
GAG
[ENA]
¢þ
>WENV180938251
ODTX01001096
[ODTX] human metagenome; G_DNA_Supragingival plaque
11206
11292
+
Leu
GAG
[ENA]
¢þ
>WENV180973306
ODUW01003158
[ODUW] human metagenome; G_DNA_Supragingival plaque
6
92
+
Leu
GAG
[ENA]
¢þ
>WENV180981072
ODVE01006408
[ODVE] human metagenome; G_DNA_Supragingival plaque
3201
3115
-
Leu
GAG
[ENA]
¢þ
>WENV181009098
ODWE01029906
[ODWE] human metagenome; G_DNA_Supragingival plaque
355
269
-
Leu
GAG
[ENA]
¢þ
>WENV181020378
ODWU01153256
[ODWU] human metagenome; G_DNA_Supragingival plaque
220
134
-
Leu
GAG
[ENA]
¢þ
>WENV181050490
ODYD01021725
[ODYD] human metagenome; G_DNA_Supragingival plaque
1059
1145
+
Leu
GAG
[ENA]
¢þ
>WENV181063339
ODYP01000450
[ODYP] human metagenome; G_DNA_Supragingival plaque
20676
20762
+
Leu
GAG
[ENA]
¢þ
>WENV181077429
OEAP01055621
[OEAP] human metagenome; G_DNA_Supragingival plaque
805
719
-
Leu
GAG
[ENA]
¢þ
>WENV181078659
OEAS01000243
[OEAS] human metagenome; G_DNA_Supragingival plaque
29068
29154
+
Leu
GAG
[ENA]
¢þ
>WENV181091855
OEBC01108350
[OEBC] human metagenome; G_DNA_Supragingival plaque
265
351
+
Leu
GAG
[ENA]
¢þ
>WENV181146746
OEHQ01021552
[OEHQ] human metagenome; G_DNA_Supragingival plaque
738
652
-
Leu
GAG
[ENA]
¢þ
>WENV181153166
OEIA01025505
[OEIA] human metagenome; G_DNA_Supragingival plaque
767
681
-
Leu
GAG
[ENA]
¢þ
>WENV181160943
OEIK01068966
[OEIK] human metagenome; G_DNA_Supragingival plaque
31
117
+
Leu
GAG
[ENA]
¢þ
>WENV181179220
OEJT01002054
[OEJT] human metagenome; G_DNA_Supragingival plaque
4299
4385
+
Leu
GAG
[ENA]
¢þ
>WENV181188014
OEOE01013630
[OEOE] activated sludge metagenome; Activated Sludge
726
812
+
Leu
GAG
[ENA]
¢þ
>WENV181189550
OEOF01082560
[OEOF] activated sludge metagenome; Activated Sludge
266
353
+
Leu
GAG
[ENA]
¢þ
>WENV181311904
OFJB01020929
[OFJB] sludge metagenome; sludge
704
790
+
Leu
GAG
[ENA]
¢þ
>WENV183508540
OMHE01000300
[OMHE] human oral metagenome; human oral
927
1013
+
Leu
GAG
[ENA]
¢þ
>WENV183509281
OMHH01004910
[OMHH] human oral metagenome; human oral
496
410
-
Leu
GAG
[ENA]
¢þ
>WENV183708533
PDWI01017111
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
31
119
+
Leu
GAG
[ENA]
¢þ
>WENV183719234
PDWJ01010948
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9077
9164
+
Leu
GAG
[ENA]
¢þ
>WENV170551971
CXWJ01032981
[CXWJ] wastewater metagenome; activated sludge
3797
3709
-
Leu
GAG
[ENA]
¢þ
>WENV170784055
MCHG01000004
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
363911
363823
-
Leu
GAG
[ENA]
¢þ
>C181219287
LT618780
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
985663
985575
-
Leu
GAG
-
¡û
>C181219685
LT618790
Actinomycetota
Propionibacterium freudenreichii [LT618789, LT618790]
1085400
1085312
-
Leu
GAG
-
¡û
>C181229761
LT985188
Actinomycetota
Micropruina glycogenica [LT985188]
1773251
1773337
+
Leu
GAG
-
¡û
>C191030104
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
1497979
1497893
-
Leu
GAG
-
¡û
>C191173834
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
2235420
2235506
+
Leu
GAG
-
¡û
>C191210849
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
2230883
2230969
+
Leu
GAG
-
¡û
>C191214564
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
2210308
2210394
+
Leu
GAG
-
¡û
>W141557451
JHVD01000024
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
27483
27569
+
Leu
GAG
[ENA]
¡û
>W1911076315
NMVK01000006
Actinomycetota
Enemella evansiae NML 150272 [NMVK]
144803
144891
+
Leu
GAG
[ENA]
¡û
>W1911076354
NMVL01000010
Actinomycetota
Enemella evansiae NML 140250 [NMVL]
55520
55432
-
Leu
GAG
[ENA]
¡û
>W1911076395
NMVM01000001
Actinomycetota
Enemella evansiae NML 090529 [NMVM]
624172
624260
+
Leu
GAG
[ENA]
¡û
>W1911076449
NMVN01000001
Actinomycetota
Enemella evansiae NML 061049 [NMVN]
288798
288710
-
Leu
GAG
[ENA]
¡û
>W1911076522
NMVO01000017
Actinomycetota
Enemella evansiae NML 030167 [NMVO]
234323
234411
+
Leu
GAG
[ENA]
¡û
>W1911076543
NMVP01000001
Actinomycetota
Enemella evansiae NML 020265 [NMVP]
226909
226821
-
Leu
GAG
[ENA]
¡û
>W1911076599
NMVQ01000012
Actinomycetota
Enemella dayhoffiae NML 130396 [NMVQ]
353894
353982
+
Leu
GAG
[ENA]
¡û
>W1911575878
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
1736363
1736275
-
Leu
GAG
[ENA]
¡û
>W1810058021
PDJC01000001
Actinomycetota
Propionicimonas paludicola DSM 15597 [PDJC]
1089299
1089213
-
Leu
GAG
[ENA]
¡û
>W1510061614
CCYM01000001
Actinomycetota
Nigerium massiliense SIT7 [CCYM]
23744
23832
+
Leu
GAG
[ENA]
¡û
>C121002941
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
2247759
2247845
+
Leu
GAG
[Ensembl]
¡û
>W1610050492
BBFX01000261
Actinomycetota
Granulicoccus phenolivorans JCM 15570 [BBFX]
2675
2763
+
Leu
GAG
[ENA]
¡û
>W1610068026
BCQZ01000018
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
40227
40315
+
Leu
GAG
[ENA]
¡û
>W1610074507
BCWS01000014
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
7534
7448
-
Leu
GAG
[ENA]
¡û
>W1610946164
LUYM01000020
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
329994
329906
-
Leu
GAG
[ENA]
¡û
>W1710046891
BBFX01000261
Actinomycetota
Granulicoccus phenolivorans JCM 15570 [BBFX]
2675
2763
+
Leu
GAG
[ENA]
¡û
>W1710065399
BCQZ01000018
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
40227
40315
+
Leu
GAG
[ENA]
¡û
>W1710071625
BCWS01000014
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
7534
7448
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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