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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383873 (31 seq.)
>W1710856845
LLZR01000007
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
191881
191955
+
Glu
CTC
[ENA]
¡û
>W1711075320
LSKH01000292
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
12838
12764
-
Glu
TTC
[ENA]
¡û
>W1712076995
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
715578
715504
-
Glu
CTC
[ENA]
¡û
>C171047035
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
595089
595163
+
Glu
CTC
-
¡û
>W131251297
CAVK010000081
Alphaproteobacteria
Sphingobium indicum BiD32 [CAVK]
9223
9149
-
Glu
CTC
[ENA]
¡û
>WENV180028388
FTJA01182826
[FTJA] metagenome; soil
334
260
-
Glu
CTC
[ENA]
¢þ
>WENV181228019
OFDN01111004
[OFDN] hot springs metagenome; Water
116
42
-
Glu
CTC
[ENA]
¢þ
>W141191353
AYOY01000156
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
11778
11852
+
Glu
CTC
[ENA]
¡û
>WENV183726624
PJTO01000033
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
176204
176278
+
Glu
CTC
[ENA]
¢þ
>WENV183748779
PPFU01079777
[PPFU] hypolithon metagenome; Antarctic Hypolithon
515
589
+
Glu
CTC
[ENA]
¢þ
>WENV183749565
PPFU01185893
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3263
3189
-
Glu
CTC
[ENA]
¢þ
>WENV170136807
CENV01078639
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2330
2404
+
Glu
CTC
[ENA]
¢þ
>WENV170231138
CEQH01126467
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
346
272
-
Glu
CTC
[ENA]
¢þ
>WENV170236528
CEQL01327792
[CEQL] marine metagenome genome assembly TARA_076_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
116
42
-
Glu
CTC
[ENA]
¢þ
>WENV170475985
CEVI01057560
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
109
183
+
Glu
CTC
[ENA]
¢þ
>WENV170555423
CXWL01000579
[CXWL] groundwater metagenome; biofilm material
54039
53965
-
Glu
CTC
[ENA]
¢þ
>WENV170555541
CXWL01000961
[CXWL] groundwater metagenome; biofilm material
5602
5676
+
Glu
CTC
[ENA]
¢þ
>WENV170556137
CXWL01005137
[CXWL] groundwater metagenome; biofilm material
72526
72600
+
Glu
CTC
[ENA]
¢þ
>C181089675
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
2112575
2112649
+
Glu
CTC
-
¡û
>W141520458
JGVR01000019
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
58084
58158
+
Glu
CTC
[ENA]
¡û
>C191063625
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
1631173
1631247
+
Glu
CTC
-
¡û
>C191163690
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
3383419
3383493
+
Glu
CTC
-
¡û
>W1911114826
NOIW01000058
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
16698
16772
+
Glu
CTC
[ENA]
¡û
>W1911737885
QTTB01000004
Alphaproteobacteria
Tsuneonella troitsensis KMM 6042 [QTTB]
998216
998290
+
Glu
CTC
[ENA]
¡û
>W1810725213
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
481365
481439
+
Glu
CTC
[ENA]
¡û
>W1810779162
QQNB01000001
Alphaproteobacteria
Sphingomonas aracearum WZY 27 [QQNB]
138463
138537
+
Glu
TTC
[ENA]
¡û
>W1510941335
JFFT01000012
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
35271
35345
+
Glu
CTC
[ENA]
¡û
>W1511587091
LAZX01000094
Alphaproteobacteria
Sphingomonas sp. Ag1 [LAZX]
62945
63019
+
Glu
TTC
[ENA]
¡û
>C161092723
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
2492062
2491988
-
Glu
CTC
[Ensembl]
¡û
>W1610719226
LLZR01000007
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
191881
191955
+
Glu
CTC
[ENA]
¡û
>W1610914625
LSKH01000292
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
12838
12764
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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