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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.383978 (113 seq.)
>W1711302764
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
37058
37132
+
Thr
GGT
[ENA]
¡û
>W1711302794
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
36579
36505
-
Thr
GGT
[ENA]
¡û
>W1711305349
MAMQ01000015
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
41612
41538
-
Thr
GGT
[ENA]
¡û
>W1711306364
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
36594
36520
-
Thr
GGT
[ENA]
¡û
>W1711307553
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
50783
50857
+
Thr
GGT
[ENA]
¡û
>W1711307578
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
13893
13819
-
Thr
GGT
[ENA]
¡û
>W1711307648
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
36593
36519
-
Thr
GGT
[ENA]
¡û
>W1711525206
MLQN01000002
Campylobacterota
Helicobacter sp. CLO-3 [MLQN]
25063
24989
-
Thr
GGT
[ENA]
¡û
>W131241821
BASD01000004
Campylobacterota
Helicobacter fennelliae MRY12-0050 [BASD]
203796
203870
+
Thr
GGT
[ENA]
¡û
>C026895
BX571656
Campylobacterota
Wolinella succinogenes [BX571656]
453588
453662
+
Thr
GGT
[Ensembl]
¡û
>WENV180242155
OBDI01107075
[OBDI] metagenome; diffuse fluid
129
55
-
Thr
GGT
[ENA]
¢þ
>WENV180242401
OBDI01214608
[OBDI] metagenome; diffuse fluid
204
130
-
Thr
GGT
[ENA]
¢þ
>WENV180287798
OBIL01004377
[OBIL] metagenome; hydrothermal vent
375
449
+
Thr
GGT
[ENA]
¢þ
>WENV180287827
OBIL01005993
[OBIL] metagenome; hydrothermal vent
180
254
+
Thr
GGT
[ENA]
¢þ
>WENV180581367
OCMH01127279
[OCMH] metagenome; diffuse fluid
176
102
-
Thr
GGT
[ENA]
¢þ
>WENV180634528
OCRB01022993
[OCRB] metagenome; diffuse fluid
371
445
+
Thr
GGT
[ENA]
¢þ
>WENV181200835
OERL01013657
[OERL] metagenome; Caecal content
276
350
+
Thr
GGT
[ENA]
¢þ
>WENV181205236
OESA01018119
[OESA] metagenome; Caecal content
646
572
-
Thr
GGT
[ENA]
¢þ
>WENV181208364
OFBB01005442
[OFBB] metagenome; hydrothermal vent
1033
1107
+
Thr
GGT
[ENA]
¢þ
>WENV181211770
OFBL01006522
[OFBL] metagenome; hydrothermal vent
270
344
+
Thr
GGT
[ENA]
¢þ
>WENV181214275
OFBX01000226
[OFBX] metagenome; hydrothermal vent
1620
1546
-
Thr
GGT
[ENA]
¢þ
>WENV181214505
OFBY01000765
[OFBY] metagenome; hydrothermal vent
1594
1520
-
Thr
GGT
[ENA]
¢þ
>WENV181214670
OFBY01006041
[OFBY] metagenome; hydrothermal vent
862
788
-
Thr
GGT
[ENA]
¢þ
>WENV181215266
OFBZ01013724
[OFBZ] metagenome; hydrothermal vent
9
83
+
Thr
GGT
[ENA]
¢þ
>WENV181224549
OFDF01009143
[OFDF] metagenome; hydrothermal vent
363
289
-
Thr
GGT
[ENA]
¢þ
>WENV181304174
OFHW01003636
[OFHW] metagenome; Caecal content
263
337
+
Thr
GGT
[ENA]
¢þ
>W08010358
ABQU01000022
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
38514
38443
-
Thr
GGT
[ENA]
¡û
>W141204246
AZJJ01000001
Campylobacterota
Helicobacter canis NCTC 12740 [AZJJ]
349649
349575
-
Thr
GGT
[ENA]
¡û
>WENV183073922
OLIU01003054
[OLIU] human gut metagenome; stool sample
3172
3246
+
Thr
GGT
[ENA]
¢þ
>WENV170635952
JFBN01012145
[JFBN] chicken gut metagenome; ceca of Broiler chicken
36632
36558
-
Thr
GGT
[ENA]
¢þ
>C181054485
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1651068
1651142
+
Thr
GGT
-
¡û
>W09119168
ACDO01000007
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
10600
10526
-
Thr
GGT
[ENA]
¡û
>C191000218
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
1624244
1624170
-
Thr
GGT
-
¡û
>C191002293
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
1646181
1646107
-
Thr
GGT
-
¡û
>C191002329
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
1607635
1607561
-
Thr
GGT
-
¡û
>W09134330
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
143086
143160
+
Thr
GGT
[ENA]
¡û
>W141558675
JHWC01000007
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
78473
78547
+
Thr
GGT
[ENA]
¡û
>W1910544168
FZKF01000022
Campylobacterota
Helicobacter felis [FZKF]
24930
24856
-
Thr
GGT
[ENA]
¡û
>W1910544187
FZKG01000006
Campylobacterota
Helicobacter felis [FZKG]
25308
25234
-
Thr
GGT
[ENA]
¡û
>W1910544346
FZKK01000012
Campylobacterota
Helicobacter felis [FZKK]
98501
98575
+
Thr
GGT
[ENA]
¡û
>W1910544404
FZKM01000007
Campylobacterota
Helicobacter felis [FZKM]
25018
24944
-
Thr
GGT
[ENA]
¡û
>W1910544547
FZKQ01000007
Campylobacterota
Helicobacter felis [FZKQ]
99275
99349
+
Thr
GGT
[ENA]
¡û
>W1910544773
FZKW01000019
Campylobacterota
Helicobacter felis [FZKW]
50272
50198
-
Thr
GGT
[ENA]
¡û
>W1910544802
FZKX01000020
Campylobacterota
Helicobacter felis [FZKX]
99284
99358
+
Thr
GGT
[ENA]
¡û
>W1910544844
FZKY01000029
Campylobacterota
Helicobacter felis [FZKY]
64973
65047
+
Thr
GGT
[ENA]
¡û
>W1910545089
FZLF01000017
Campylobacterota
Helicobacter felis [FZLF]
98332
98406
+
Thr
GGT
[ENA]
¡û
>W1910545112
FZLG01000007
Campylobacterota
Helicobacter felis [FZLG]
98515
98589
+
Thr
GGT
[ENA]
¡û
>W1910545159
FZLH01000021
Campylobacterota
Helicobacter felis [FZLH]
65488
65414
-
Thr
GGT
[ENA]
¡û
>W1910545330
FZLM01000015
Campylobacterota
Helicobacter felis [FZLM]
25121
25047
-
Thr
GGT
[ENA]
¡û
>W1910545774
FZLY01000012
Campylobacterota
Helicobacter salomonis [FZLY]
6021
6095
+
Thr
GGT
[ENA]
¡û
>W1910545846
FZMA01000006
Campylobacterota
Helicobacter salomonis [FZMA]
39477
39403
-
Thr
GGT
[ENA]
¡û
>W1910546164
FZMJ01000010
Campylobacterota
Helicobacter cinaedi [FZMJ]
33032
32958
-
Thr
GGT
[ENA]
¡û
>W1910546237
FZML01000017
Campylobacterota
Helicobacter muridarum [FZML]
138389
138463
+
Thr
GGT
[ENA]
¡û
>W1910546295
FZMN01000006
Campylobacterota
Helicobacter muridarum [FZMN]
138389
138463
+
Thr
GGT
[ENA]
¡û
>W1910546479
FZMS01000001
Campylobacterota
Helicobacter bilis [FZMS]
18719
18793
+
Thr
GGT
[ENA]
¡û
>W1910546526
FZMT01000007
Campylobacterota
Helicobacter bilis [FZMT]
98801
98875
+
Thr
GGT
[ENA]
¡û
>W1910546591
FZMV01000006
Campylobacterota
Helicobacter pullorum [FZMV]
36576
36502
-
Thr
GGT
[ENA]
¡û
>W1910546668
FZMX01000008
Campylobacterota
Helicobacter pullorum [FZMX]
35600
35526
-
Thr
GGT
[ENA]
¡û
>W1910546779
FZND01000025
Campylobacterota
Helicobacter trogontum [FZND]
75545
75619
+
Thr
GGT
[ENA]
¡û
>W1910549555
FZPI01000004
Campylobacterota
Helicobacter pametensis [FZPI]
129102
129028
-
Thr
GGT
[ENA]
¡û
>W1910549601
FZPK01000003
Campylobacterota
Helicobacter rappini [FZPK]
74808
74882
+
Thr
GGT
[ENA]
¡û
>W1910549659
FZPL01000005
Campylobacterota
Helicobacter pametensis [FZPL]
129101
129027
-
Thr
GGT
[ENA]
¡û
>W1910549690
FZPM01000025
Campylobacterota
Helicobacter aurati [FZPM]
78225
78299
+
Thr
GGT
[ENA]
¡û
>W1910549731
FZPN01000011
Campylobacterota
Helicobacter canadensis [FZPN]
28644
28570
-
Thr
GGT
[ENA]
¡û
>W1910550311
FZQU01000004
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZQU]
20099
20025
-
Thr
GGT
[ENA]
¡û
>W1910550488
FZQY01000005
Campylobacterota
Helicobacter sp. 'house sparrow 1' [FZQY]
63768
63842
+
Thr
GGT
[ENA]
¡û
>W1910584295
JXTW01000006
Campylobacterota
Helicobacter anseris 2013ZJHSD2 [JXTW]
30352
30426
+
Thr
GGT
[ENA]
¡û
>W1910756228
MLAR01000001
Campylobacterota
Helicobacter sp. 13S00401-1 [MLAR]
95735
95661
-
Thr
GGT
[ENA]
¡û
>W1910852892
NBIU01000003
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
67561
67635
+
Thr
GGT
[ENA]
¡û
>W1911490648
OANQ01000001
Campylobacterota
Helicobacter salomonis [OANQ]
32777
32851
+
Thr
GGT
[ENA]
¡û
>W1911770769
QXJE01000001
Campylobacterota
Helicobacter felis cn23e [QXJE]
26733
26659
-
Thr
GGT
[ENA]
¡û
>W1911770806
QXJF01000005
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
19500
19574
+
Thr
GGT
[ENA]
¡û
>W1810002663
BEYY01000086
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
82944
82870
-
Thr
GGT
[ENA]
¡û
>W1810002752
BEZB01000228
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
28159
28085
-
Thr
GGT
[ENA]
¡û
>W1810002782
BEZC01000191
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
9075
9149
+
Thr
GGT
[ENA]
¡û
>W1810002810
BEZD01000069
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
82939
82865
-
Thr
GGT
[ENA]
¡û
>W1810002889
BEZF01000157
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
9085
9159
+
Thr
GGT
[ENA]
¡û
>W1810002916
BEZG01000061
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
82922
82848
-
Thr
GGT
[ENA]
¡û
>W1810003042
BEZJ01000135
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
9058
9132
+
Thr
GGT
[ENA]
¡û
>W1810003079
BEZK01000127
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
9057
9131
+
Thr
GGT
[ENA]
¡û
>W1810003093
BEZL01000051
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
82905
82831
-
Thr
GGT
[ENA]
¡û
>W1810003131
BEZM01000053
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
10472
10398
-
Thr
GGT
[ENA]
¡û
>W1810003253
BEZP01000186
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
9067
9141
+
Thr
GGT
[ENA]
¡û
>W1810003282
BEZQ01000140
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
21469
21395
-
Thr
GGT
[ENA]
¡û
>W1810003329
BEZR01000169
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
9103
9177
+
Thr
GGT
[ENA]
¡û
>W1810003355
BEZS01000063
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
82974
82900
-
Thr
GGT
[ENA]
¡û
>W1810010763
BGKF01000039
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
53909
53835
-
Thr
GGT
[ENA]
¡û
>W1810046375
NXLL01000025
Campylobacterota
Helicobacter sp. MIT 00-7814 [NXLL]
9072
9146
+
Thr
GGT
[ENA]
¡û
>W1810046455
NXLN01000024
Campylobacterota
Helicobacter sp. MIT 01-3238 [NXLN]
2989
3063
+
Thr
GGT
[ENA]
¡û
>W1810046520
NXLP01000006
Campylobacterota
Helicobacter sp. MIT 14-3879 [NXLP]
48827
48753
-
Thr
GGT
[ENA]
¡û
>W1810046537
NXLP01000034
Campylobacterota
Helicobacter sp. MIT 14-3879 [NXLP]
14021
13947
-
Thr
GGT
[ENA]
¡û
>W1810046642
NXLS01000008
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
35870
35796
-
Thr
GGT
[ENA]
¡û
>W1810046706
NXLU01000004
Campylobacterota
Helicobacter cholecystus ATCC 700242 [NXLU]
78283
78209
-
Thr
GGT
[ENA]
¡û
>W1810046740
NXLV01000014
Campylobacterota
Helicobacter brantae MIT 04-9366 [NXLV]
22797
22723
-
Thr
GGT
[ENA]
¡û
>W1810046808
NXLX01000007
Campylobacterota
Helicobacter anseris MIT 04-9362 [NXLX]
20511
20437
-
Thr
GGT
[ENA]
¡û
>W1511350779
JRMQ01000001
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
109732
109658
-
Thr
GGT
[ENA]
¡û
>W1511350854
JRMS01000021
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
29450
29376
-
Thr
GGT
[ENA]
¡û
>W1511353104
JROY01000011
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
19526
19452
-
Thr
GGT
[ENA]
¡û
>W1511353246
JRPC01000040
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
11356
11430
+
Thr
GGT
[ENA]
¡û
>W1511353370
JRPF01000002
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
83384
83458
+
Thr
GGT
[ENA]
¡û
>W1511353567
JRPL01000001
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
1083737
1083811
+
Thr
GGT
[ENA]
¡û
>W1511353857
JRPR01000040
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
677
751
+
Thr
GGT
[ENA]
¡û
>C161108061
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
1196711
1196637
-
Thr
GGT
[Ensembl]
¡û
>C131000554
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
1645776
1645702
-
Thr
GGT
[Ensembl]
¡û
>W1610522135
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
36592
36518
-
Thr
GGT
[ENA]
¡û
>W1611053089
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
37058
37132
+
Thr
GGT
[ENA]
¡û
>W1611053119
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
36579
36505
-
Thr
GGT
[ENA]
¡û
>W1611054816
MAMQ01000015
Campylobacterota
Helicobacter sp. CLO-3 [MAMQ]
41612
41538
-
Thr
GGT
[ENA]
¡û
>W1611055718
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
36594
36520
-
Thr
GGT
[ENA]
¡û
>W1611055836
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
50783
50857
+
Thr
GGT
[ENA]
¡û
>W1611055861
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
13893
13819
-
Thr
GGT
[ENA]
¡û
>W1611055931
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
36593
36519
-
Thr
GGT
[ENA]
¡û
>W1710622061
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
36592
36518
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK