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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.385955 (7 seq.)
>WENV180041963
LLBZ010819882
[LLBZ] soil metagenome; soil from tomato rhizosphere
438
364
-
Val
CAC
[ENA]
¢þ
>WENV180350385
OBLQ010000479
[OBLQ] soil metagenome; soil
14862
14936
+
Val
CAC
[ENA]
¢þ
>WENV017863
AACY020494603
Marine microbial communities from Global Ocean Sampling (GOS)
1504
1430
-
Val
GAC
[ENA]
>WENV170668180
LADL02001637
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
23608
23682
+
Val
CAC
[ENA]
¢þ
>W1810158032
PJCH01000001
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
450281
450207
-
Val
CAC
[ENA]
¡û
>W1810158042
PJCH01000005
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
125296
125370
+
Val
GAC
[ENA]
¡û
>WENV034368
AACY021603711
Marine microbial communities from Global Ocean Sampling (GOS)
816
742
-
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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