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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.385979 (8 seq.)
>WENV180747251
ODHN01003170
[ODHN] human metagenome; G_DNA_Stool
2272
2344
+
Gln
TTG
[ENA]
¢þ
>WENV183201626
OLPW01068881
[OLPW] human gut metagenome; faeces
187
259
+
Gln
TTG
[ENA]
¢þ
>WENV183654506
OQWA01054135
[OQWA] human gut metagenome; human gut
17
89
+
Gln
TTG
[ENA]
¢þ
>W141559618
JHWW01000008
Bacillota
Lachnospiraceae bacterium V9D3004 [JHWW]
22059
22131
+
Gln
TTG
[ENA]
¡û
>W1910504097
FYDE01000005
Bacillota
Marasmitruncus massiliensis Marseille-P3646 [FYDE]
1287723
1287797
+
Gln
TTG
[ENA]
¡û
>W1810816744
QSBX01000015
Bacillota
Anaerotruncus sp. AF02-27 [QSBX]
57595
57669
+
Gln
TTG
[ENA]
¡û
>W1610461229
FKLA01000008
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
115175
115249
+
Gln
TTG
[ENA]
¡û
>W1710460503
FKLA01000008
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
115175
115249
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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