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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.386061 (64 seq.)
>W131158403
AQUA01000005
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
57334
57262
-
Gln
CTG
[ENA]
¡û
>W131158439
AQUB01000064
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
150
224
+
Gln
CTG
[ENA]
¡û
>WENV180110501
OAPN01000208
[OAPN] marine metagenome; 2011
1654
1726
+
Gln
CTG
[ENA]
¢þ
>WENV180113808
OAPR01028075
[OAPR] marine metagenome; seawater
187
259
+
Gln
CTG
[ENA]
¢þ
>WENV180357394
OBNN01006947
[OBNN] marine metagenome; Coastal water
562
634
+
Gln
CTG
[ENA]
¢þ
>WENV180357412
OBNN01008193
[OBNN] marine metagenome; Coastal water
584
512
-
Gln
CTG
[ENA]
¢þ
>WENV180377951
OBON01225919
[OBON] marine metagenome; sea water
3
75
+
Gln
CTG
[ENA]
¢þ
>WENV180393086
OBPP01071867
[OBPP] marine metagenome; ENVO:00002042
175
247
+
Gln
CTG
[ENA]
¢þ
>WENV181368305
OFQL01000363
[OFQL] freshwater metagenome; Freshwater Lake
4725
4797
+
Gln
CTG
[ENA]
¢þ
>WENV181368361
OFQL01001244
[OFQL] freshwater metagenome; Freshwater Lake
970
898
-
Gln
CTG
[ENA]
¢þ
>WENV181368799
OFQN01000670
[OFQN] freshwater metagenome; Freshwater Lake
1404
1332
-
Gln
CTG
[ENA]
¢þ
>WENV181368909
OFQN01003284
[OFQN] freshwater metagenome; Freshwater Lake
1288
1360
+
Gln
CTG
[ENA]
¢þ
>WENV181369427
OFQP01001944
[OFQP] freshwater metagenome; Freshwater Lake
1053
981
-
Gln
CTG
[ENA]
¢þ
>WENV181369999
OFQR01005252
[OFQR] freshwater metagenome; Freshwater Lake
286
214
-
Gln
CTG
[ENA]
¢þ
>WENV181370285
OFQS01002283
[OFQS] freshwater metagenome; Freshwater Lake
1582
1510
-
Gln
CTG
[ENA]
¢þ
>WENV181370662
OFQT01002379
[OFQT] freshwater metagenome; Freshwater Lake
455
527
+
Gln
CTG
[ENA]
¢þ
>WENV181379319
OFRD01000444
[OFRD] wastewater metagenome; Exp Tend CN 100WW
14317
14245
-
Gln
CTG
[ENA]
¢þ
>WENV181380094
OFRD01030144
[OFRD] wastewater metagenome; Exp Tend CN 100WW
831
903
+
Gln
CTG
[ENA]
¢þ
>WENV181386121
OFRL01000718
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
7193
7265
+
Gln
CTG
[ENA]
¢þ
>WENV181387110
OFRL01043654
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
639
711
+
Gln
CTG
[ENA]
¢þ
>WENV181395813
OFSB01005645
[OFSB] freshwater metagenome; Freshwater Lake
822
750
-
Gln
CTG
[ENA]
¢þ
>W141170893
AXZA01000022
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
9642
9570
-
Gln
CTG
[ENA]
¡û
>WENV181836111
OGVJ01000947
[OGVJ] freshwater metagenome; freshwater
3098
3026
-
Gln
CTG
[ENA]
¢þ
>WENV181836314
OGVJ01004293
[OGVJ] freshwater metagenome; freshwater
1260
1332
+
Gln
CTG
[ENA]
¢þ
>WENV181842682
OGVT01010991
[OGVT] freshwater metagenome; freshwater
464
392
-
Gln
CTG
[ENA]
¢þ
>WENV181843421
OGVU01014207
[OGVU] freshwater metagenome; freshwater
324
396
+
Gln
CTG
[ENA]
¢þ
>WENV181848159
OGVZ01002599
[OGVZ] freshwater metagenome; freshwater
2828
2900
+
Gln
CTG
[ENA]
¢þ
>WENV181851005
OGWE01005163
[OGWE] freshwater metagenome; freshwater
293
221
-
Gln
CTG
[ENA]
¢þ
>WENV181851217
OGWE01014284
[OGWE] freshwater metagenome; freshwater
583
511
-
Gln
CTG
[ENA]
¢þ
>WENV181852279
OGWF01012509
[OGWF] freshwater metagenome; freshwater
173
245
+
Gln
CTG
[ENA]
¢þ
>WENV181855648
OGWM01000266
[OGWM] freshwater metagenome; freshwater
1206
1278
+
Gln
CTG
[ENA]
¢þ
>WENV183661540
ORJL010116858
[ORJL] groundwater metagenome; groundwater
695
623
-
Gln
CTG
[ENA]
¢þ
>WENV183661600
ORJL010121847
[ORJL] groundwater metagenome; groundwater
175
247
+
Gln
CTG
[ENA]
¢þ
>WENV183670698
ORJL010974246
[ORJL] groundwater metagenome; groundwater
84
156
+
Gln
CTG
[ENA]
¢þ
>WENV183673215
ORJL011256398
[ORJL] groundwater metagenome; groundwater
101
173
+
Gln
CTG
[ENA]
¢þ
>WENV183679799
ORMF010105797
[ORMF] groundwater metagenome; groundwater
580
508
-
Gln
CTG
[ENA]
¢þ
>WENV170645510
JNSK01000036
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
10469
10541
+
Gln
CTG
[ENA]
¢þ
>WENV170645519
JNSK01000043
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
27622
27548
-
Gln
CTG
[ENA]
¢þ
>WENV170645523
JNSK01000047
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13218
13146
-
Gln
CTG
[ENA]
¢þ
>WENV170645546
JNSK01000101
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8158
8084
-
Gln
CTG
[ENA]
¢þ
>WENV170961719
MLJW01000660
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4912
4838
-
Gln
CTG
[ENA]
¢þ
>C181018661
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
1150704
1150632
-
Gln
CTG
-
¡û
>C181018696
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
1281113
1281041
-
Gln
CTG
-
¡û
>C181018728
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
769901
769973
+
Gln
CTG
-
¡û
>C181020951
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
435280
435352
+
Gln
CTG
-
¡û
>C181020988
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
406795
406867
+
Gln
CTG
-
¡û
>C181021024
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
368382
368454
+
Gln
CTG
-
¡û
>C181021172
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
376116
376188
+
Gln
CTG
-
¡û
>C181021248
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
424037
424109
+
Gln
CTG
-
¡û
>C181021284
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
361690
361762
+
Gln
CTG
-
¡û
>WENV040342
AACY022077639
Marine microbial communities from Global Ocean Sampling (GOS)
366
290
-
Gln
CTG
[ENA]
>WENV048991
AACY022764038
Marine microbial communities from Global Ocean Sampling (GOS)
10
86
+
Gln
CTG
[ENA]
>WENV057225
AACY023288883
Marine microbial communities from Global Ocean Sampling (GOS)
304
380
+
Gln
CTG
[ENA]
>WENV057255
AACY023289530
Marine microbial communities from Global Ocean Sampling (GOS)
172
248
+
Gln
CTG
[ENA]
>WENV057429
AACY023294555
Marine microbial communities from Global Ocean Sampling (GOS)
230
154
-
Gln
CTG
[ENA]
>WENV057872
AACY023309487
Marine microbial communities from Global Ocean Sampling (GOS)
884
960
+
Gln
CTG
[ENA]
>WENV057940
AACY023312070
Marine microbial communities from Global Ocean Sampling (GOS)
1085
1161
+
Gln
CTG
[ENA]
>WENV058100
AACY023317597
Marine microbial communities from Global Ocean Sampling (GOS)
1157
1233
+
Gln
CTG
[ENA]
>WENV058978
AACY023349474
Marine microbial communities from Global Ocean Sampling (GOS)
83
7
-
Gln
CTG
[ENA]
>WENV006647
AACY020177715
Marine microbial communities from Global Ocean Sampling (GOS)
1175
1251
+
Gln
CTG
[ENA]
>W1610597584
LFFA01000038
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
54303
54231
-
Gln
CTG
[ENA]
¡û
>WENV075051
AACY024008632
Marine microbial communities from Global Ocean Sampling (GOS)
478
402
-
Gln
CTG
[ENA]
>WENV076394
AACY024096360
Marine microbial communities from Global Ocean Sampling (GOS)
292
368
+
Gln
CTG
[ENA]
>W1710718831
LFFA01000038
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
54303
54231
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK