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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.388132 (101 seq.)
>W1712039485
NFJS01000026
Bacillota
Drancourtella sp. An210 [NFJS]
34
107
+
Glu
TTC
[ENA]
¡û
>W1712039487
NFJS01000028
Bacillota
Drancourtella sp. An210 [NFJS]
33965
33892
-
Glu
TTC
[ENA]
¡û
>W1712040671
NFKN01000005
Bacillota
Drancourtella sp. An177 [NFKN]
130
203
+
Glu
TTC
[ENA]
¡û
>W1712040696
NFKN01000019
Bacillota
Drancourtella sp. An177 [NFKN]
50194
50121
-
Glu
TTC
[ENA]
¡û
>C171064249
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590320
2590394
+
Glu
TTC
-
¡û
>C171064276
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618400
2618474
+
Glu
TTC
-
¡û
>C171064307
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1117627
1117553
-
Glu
TTC
-
¡û
>C171064312
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
716058
715984
-
Glu
TTC
-
¡û
>C171064319
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709760
709686
-
Glu
TTC
-
¡û
>C171064346
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695817
695743
-
Glu
TTC
-
¡û
>C171064358
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
689094
689020
-
Glu
TTC
-
¡û
>W131178997
ARMA01000003
Bacillota
Peptostreptococcus anaerobius DSM 2949 [ARMA]
170
98
-
Glu
TTC
[ENA]
¡û
>W131179000
ARMA01000021
Bacillota
Peptostreptococcus anaerobius DSM 2949 [ARMA]
9272
9200
-
Glu
TTC
[ENA]
¡û
>W131179005
ARMA01000039
Bacillota
Peptostreptococcus anaerobius DSM 2949 [ARMA]
20751
20823
+
Glu
TTC
[ENA]
¡û
>WENV180043055
LQAH01000736
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
6546
6472
-
Glu
TTC
[ENA]
¢þ
>WENV180043159
LQAH01004718
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
656
582
-
Glu
TTC
[ENA]
¢þ
>WENV180043192
LQAH01009398
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
64
138
+
Glu
TTC
[ENA]
¢þ
>WENV180043241
LQAH01014131
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
684
610
-
Glu
TTC
[ENA]
¢þ
>WENV180043377
LQAH01038377
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
86
160
+
Glu
TTC
[ENA]
¢þ
>WENV180708885
ODFJ01010868
[ODFJ] human metagenome; G_DNA_Tongue dorsum
528
601
+
Glu
TTC
[ENA]
¢þ
>WENV180709391
ODFJ01068446
[ODFJ] human metagenome; G_DNA_Tongue dorsum
6
79
+
Glu
TTC
[ENA]
¢þ
>WENV180709617
ODFJ01167900
[ODFJ] human metagenome; G_DNA_Tongue dorsum
73
-1
-
Glu
TTC
[ENA]
¢þ
>WENV180720713
ODGJ01111303
[ODGJ] human metagenome; G_DNA_Tongue dorsum
92
20
-
Glu
TTC
[ENA]
¢þ
>WENV180724701
ODGR01002154
[ODGR] human metagenome; G_DNA_Tongue dorsum
722
794
+
Glu
TTC
[ENA]
¢þ
>WENV180751106
ODHS01021581
[ODHS] human metagenome; G_DNA_Supragingival plaque
543
469
-
Glu
TTC
[ENA]
¢þ
>WENV180769566
ODIG01094945
[ODIG] human metagenome; G_DNA_Tongue dorsum
305
377
+
Glu
TTC
[ENA]
¢þ
>WENV180769840
ODIG01185292
[ODIG] human metagenome; G_DNA_Tongue dorsum
83
155
+
Glu
TTC
[ENA]
¢þ
>WENV180769996
ODIG01294005
[ODIG] human metagenome; G_DNA_Tongue dorsum
132
59
-
Glu
TTC
[ENA]
¢þ
>WENV180776996
ODIK01276707
[ODIK] human metagenome; G_DNA_Tongue dorsum
2
75
+
Glu
TTC
[ENA]
¢þ
>WENV180777764
ODIL01087897
[ODIL] human metagenome; G_DNA_Supragingival plaque
164
90
-
Glu
TTC
[ENA]
¢þ
>WENV180780341
ODIN01137286
[ODIN] human metagenome; G_DNA_Throat
46
119
+
Glu
TTC
[ENA]
¢þ
>WENV180788711
ODIS01100934
[ODIS] human metagenome; G_DNA_Supragingival plaque
522
596
+
Glu
TTC
[ENA]
¢þ
>WENV180806012
ODJH01001040
[ODJH] human metagenome; G_DNA_Tongue dorsum
10718
10790
+
Glu
TTC
[ENA]
¢þ
>WENV180816844
ODJP01074601
[ODJP] human metagenome; G_DNA_Tongue dorsum
160
87
-
Glu
TTC
[ENA]
¢þ
>WENV180817887
ODJQ01003835
[ODJQ] human metagenome; G_DNA_Stool
106
32
-
Glu
TTC
[ENA]
¢þ
>WENV180833508
ODKC01068717
[ODKC] human metagenome; G_DNA_Supragingival plaque
195
269
+
Glu
TTC
[ENA]
¢þ
>WENV180844070
ODKN01031426
[ODKN] human metagenome; G_DNA_Supragingival plaque
152
78
-
Glu
TTC
[ENA]
¢þ
>WENV180847363
ODKT01069248
[ODKT] human metagenome; G_DNA_Supragingival plaque
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV180865554
ODLJ01000131
[ODLJ] human metagenome; G_DNA_Tongue dorsum
51639
51712
+
Glu
TTC
[ENA]
¢þ
>WENV180874000
ODLP01077606
[ODLP] human metagenome; G_DNA_Tongue dorsum
276
203
-
Glu
TTC
[ENA]
¢þ
>WENV180874113
ODLP01155081
[ODLP] human metagenome; G_DNA_Tongue dorsum
47
120
+
Glu
TTC
[ENA]
¢þ
>WENV180880707
ODLZ01050559
[ODLZ] human metagenome; G_DNA_Tongue dorsum
211
284
+
Glu
TTC
[ENA]
¢þ
>WENV180884500
ODMC01175965
[ODMC] human metagenome; G_DNA_Tongue dorsum
3
75
+
Glu
TTC
[ENA]
¢þ
>WENV180921102
ODTH01125559
[ODTH] human metagenome; G_DNA_Tongue dorsum
2
75
+
Glu
TTC
[ENA]
¢þ
>WENV180945370
ODUC01127045
[ODUC] human metagenome; G_DNA_Supragingival plaque
224
150
-
Glu
TTC
[ENA]
¢þ
>WENV180960359
ODUM01025601
[ODUM] human metagenome; G_DNA_Tongue dorsum
825
898
+
Glu
TTC
[ENA]
¢þ
>WENV180968684
ODUT01057283
[ODUT] human metagenome; G_DNA_Tongue dorsum
463
536
+
Glu
TTC
[ENA]
¢þ
>WENV180978427
ODUZ01092171
[ODUZ] human metagenome; G_DNA_Tongue dorsum
132
59
-
Glu
TTC
[ENA]
¢þ
>WENV180991484
ODVN01099891
[ODVN] human metagenome; G_DNA_Tongue dorsum
73
-1
-
Glu
TTC
[ENA]
¢þ
>WENV181042030
ODXS01121705
[ODXS] human metagenome; G_DNA_Tongue dorsum
172
245
+
Glu
TTC
[ENA]
¢þ
>WENV181060321
ODYM01119149
[ODYM] human metagenome; G_DNA_Tongue dorsum
108
34
-
Glu
TTC
[ENA]
¢þ
>WENV181076918
OEAP01017760
[OEAP] human metagenome; G_DNA_Supragingival plaque
1881
1807
-
Glu
TTC
[ENA]
¢þ
>WENV181077375
OEAP01048287
[OEAP] human metagenome; G_DNA_Supragingival plaque
242
316
+
Glu
TTC
[ENA]
¢þ
>WENV181083921
OEAV01033674
[OEAV] human metagenome; G_DNA_Supragingival plaque
648
722
+
Glu
TTC
[ENA]
¢þ
>WENV181087488
OEAY01051431
[OEAY] human metagenome; G_DNA_Tongue dorsum
160
87
-
Glu
TTC
[ENA]
¢þ
>WENV181087600
OEAY01081080
[OEAY] human metagenome; G_DNA_Tongue dorsum
160
87
-
Glu
TTC
[ENA]
¢þ
>WENV181087655
OEAY01105433
[OEAY] human metagenome; G_DNA_Tongue dorsum
179
252
+
Glu
TTC
[ENA]
¢þ
>WENV181096510
OEBY01168884
[OEBY] human metagenome; G_DNA_Tongue dorsum
2
75
+
Glu
TTC
[ENA]
¢þ
>WENV181098076
OECA01076279
[OECA] human metagenome; G_DNA_Tongue dorsum
246
319
+
Glu
TTC
[ENA]
¢þ
>WENV181098275
OECA01175824
[OECA] human metagenome; G_DNA_Tongue dorsum
2
75
+
Glu
TTC
[ENA]
¢þ
>WENV181105035
OEED01000841
[OEED] human metagenome; G_DNA_Tongue dorsum
18895
18968
+
Glu
TTC
[ENA]
¢þ
>WENV181105922
OEED01024933
[OEED] human metagenome; G_DNA_Tongue dorsum
821
893
+
Glu
TTC
[ENA]
¢þ
>WENV181109193
OEEJ01013963
[OEEJ] human metagenome; G_DNA_Tongue dorsum
605
532
-
Glu
TTC
[ENA]
¢þ
>WENV181151426
OEHW01050204
[OEHW] human metagenome; G_DNA_Tongue dorsum
611
684
+
Glu
TTC
[ENA]
¢þ
>WENV181153410
OEIA01073197
[OEIA] human metagenome; G_DNA_Supragingival plaque
144
70
-
Glu
TTC
[ENA]
¢þ
>WENV181157645
OEIG01018666
[OEIG] human metagenome; G_DNA_Hard palate
602
675
+
Glu
TTC
[ENA]
¢þ
>WENV181176592
OEJR01014631
[OEJR] human metagenome; G_DNA_Saliva
263
336
+
Glu
TTC
[ENA]
¢þ
>WENV181182135
OEJV01002773
[OEJV] human metagenome; G_DNA_Supragingival plaque
170
96
-
Glu
TTC
[ENA]
¢þ
>WENV181182855
OEJV01057487
[OEJV] human metagenome; G_DNA_Supragingival plaque
347
273
-
Glu
TTC
[ENA]
¢þ
>WENV181998323
OHAU01053558
[OHAU] human gut metagenome; faeces
591
518
-
Glu
TTC
[ENA]
¢þ
>WENV182849867
OKKU01001156
[OKKU] human gut metagenome; human gut
144
216
+
Glu
TTC
[ENA]
¢þ
>WENV182949939
OKVQ01002191
[OKVQ] human gut metagenome; human gut
117
43
-
Glu
TTC
[ENA]
¢þ
>WENV183717509
PDWJ01001031
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3401
3327
-
Glu
TTC
[ENA]
¢þ
>WENV183718699
PDWJ01005943
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9520
9594
+
Glu
TTC
[ENA]
¢þ
>WENV183719217
PDWJ01010849
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6163
6089
-
Glu
TTC
[ENA]
¢þ
>WENV183721521
PDWJ01073624
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
912
986
+
Glu
TTC
[ENA]
¢þ
>WENV170635465
JDSF01029499
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
256
182
-
Glu
TTC
[ENA]
¢þ
>WENV170635477
JDSF01031079
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV170674973
LCWZ01000168
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
6586
6512
-
Glu
TTC
[ENA]
¢þ
>WENV170675149
LCWZ01009875
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
809
735
-
Glu
TTC
[ENA]
¢þ
>WENV170675171
LCWZ01011728
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
663
589
-
Glu
TTC
[ENA]
¢þ
>WENV170675206
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
449
523
+
Glu
TTC
[ENA]
¢þ
>WENV170675338
LCWZ01042818
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
345
271
-
Glu
TTC
[ENA]
¢þ
>WENV170697552
LGVF01154848
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1
75
+
Glu
TTC
[ENA]
¢þ
>WENV170699105
LGVF01483016
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
828
754
-
Glu
TTC
[ENA]
¢þ
>C151057228
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166904
1166978
+
Glu
TTC
[Ensembl]
¡û
>C151057244
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178360
1178434
+
Glu
TTC
[Ensembl]
¡û
>C151057268
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
4170728
4170654
-
Glu
TTC
[Ensembl]
¡û
>C151057272
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724525
3724451
-
Glu
TTC
[Ensembl]
¡û
>W121111526
ALJM01000003
Bacillota
Peptostreptococcaceae bacterium AS15 AS15 [ALJM]
104333
104407
+
Glu
TTC
[ENA]
¡û
>W1710506677
FMUS01000011
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
82126
82052
-
Glu
TTC
[ENA]
¡û
>W1710506682
FMUS01000030
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
648
722
+
Glu
TTC
[ENA]
¡û
>W1710506713
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
78
4
-
Glu
TTC
[ENA]
¡û
>W1710547723
FODF01000005
Bacillota
Peptostreptococcus russellii [FODF]
140499
140426
-
Glu
TTC
[ENA]
¡û
>W1710547730
FODF01000016
Bacillota
Peptostreptococcus russellii [FODF]
24236
24309
+
Glu
TTC
[ENA]
¡û
>W1710553647
FOHU01000003
Bacillota
Natronincola peptidivorans [FOHU]
325654
325580
-
Glu
TTC
[ENA]
¡û
>W1710570246
FOVA01000007
Bacillota
Peptostreptococcus anaerobius [FOVA]
79081
79153
+
Glu
TTC
[ENA]
¡û
>W1710570277
FOVA01000037
Bacillota
Peptostreptococcus anaerobius [FOVA]
17966
18038
+
Glu
TTC
[ENA]
¡û
>W1710570293
FOVA01000047
Bacillota
Peptostreptococcus anaerobius [FOVA]
9258
9186
-
Glu
TTC
[ENA]
¡û
>W1710604119
FUZS01000010
Bacillota
[Eubacterium] yurii [FUZS]
66638
66712
+
Glu
TTC
[ENA]
¡û
>W1710604126
FUZS01000023
Bacillota
[Eubacterium] yurii [FUZS]
36447
36373
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK