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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.388940 (46 seq.)
>W131111453
APMB01000260
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
2108
2182
+
Arg
CCT
[ENA]
¡û
>WENV180004925
FLRT01008124
[FLRT] metagenome; saliva
41
115
+
Arg
CCT
[ENA]
¢þ
>WENV180006383
FLRY01023605
[FLRY] metagenome; saliva
254
328
+
Arg
CCT
[ENA]
¢þ
>WENV180009648
FLSC01036663
[FLSC] metagenome; saliva
112
38
-
Arg
CCT
[ENA]
¢þ
>WENV180011752
FLSK01037812
[FLSK] metagenome; saliva
187
261
+
Arg
CCT
[ENA]
¢þ
>WENV180696607
ODCT01032792
[ODCT] human metagenome; G_DNA_Buccal mucosa
213
139
-
Arg
CCT
[ENA]
¢þ
>WENV180731718
ODGW01008217
[ODGW] human metagenome; G_DNA_Supragingival plaque
812
738
-
Arg
CCT
[ENA]
¢þ
>W141145625
AWUU01000033
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
4665
4591
-
Arg
CCT
[ENA]
¡û
>W141145705
AWUW01000028
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
3968
3894
-
Arg
CCT
[ENA]
¡û
>W141145948
AWVC01000067
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
3892
3818
-
Arg
CCT
[ENA]
¡û
>W141146038
AWVE01000068
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
1940
2014
+
Arg
CCT
[ENA]
¡û
>WENV183507901
OMGZ01000146
[OMGZ] human oral metagenome; human oral
2187
2261
+
Arg
CCT
[ENA]
¢þ
>WENV183508001
OMHA01001155
[OMHA] human oral metagenome; human oral
1003
929
-
Arg
CCT
[ENA]
¢þ
>WENV183510905
OMHT01000304
[OMHT] human oral metagenome; human oral
385
311
-
Arg
CCT
[ENA]
¢þ
>C181102127
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
1531641
1531715
+
Arg
CCT
-
¡û
>C181102184
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
2098878
2098804
-
Arg
CCT
-
¡û
>C181102245
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
1085769
1085695
-
Arg
CCT
-
¡û
>C181102272
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
1377775
1377849
+
Arg
CCT
-
¡û
>C181102335
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1534491
1534417
-
Arg
CCT
-
¡û
>C181102371
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
2154432
2154506
+
Arg
CCT
-
¡û
>C181102458
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
364509
364583
+
Arg
CCT
-
¡û
>C181102541
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
1363696
1363622
-
Arg
CCT
-
¡û
>C181102571
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
2385593
2385519
-
Arg
CCT
-
¡û
>W1910371151
FUFE01000062
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
35331
35257
-
Arg
CCT
[ENA]
¡û
>W1910371179
FUFF01000006
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
113952
113878
-
Arg
CCT
[ENA]
¡û
>W1910371253
FUFG01000046
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
161643
161569
-
Arg
CCT
[ENA]
¡û
>W1910371328
FUFI01000032
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
4506
4432
-
Arg
CCT
[ENA]
¡û
>W1910372571
FUGF01000039
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
10587
10661
+
Arg
CCT
[ENA]
¡û
>W1910372608
FUGG01000020
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
40631
40705
+
Arg
CCT
[ENA]
¡û
>W1911247387
NSLL01000019
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
41527
41601
+
Arg
CCT
[ENA]
¡û
>W1911247459
NSLN01000016
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
4837
4763
-
Arg
CCT
[ENA]
¡û
>W1911247520
NSLO01000046
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
2188
2262
+
Arg
CCT
[ENA]
¡û
>W1911247564
NSLP01000048
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
4871
4797
-
Arg
CCT
[ENA]
¡û
>W1911247606
NSLQ01000036
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
3808
3734
-
Arg
CCT
[ENA]
¡û
>W1911247637
NSLR01000022
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
5291
5217
-
Arg
CCT
[ENA]
¡û
>W1911247732
NSLT01000036
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
4193
4119
-
Arg
CCT
[ENA]
¡û
>W1911247778
NSLU01000088
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
5924
5850
-
Arg
CCT
[ENA]
¡û
>W1911247825
NSLV01000061
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
2325
2399
+
Arg
CCT
[ENA]
¡û
>W1911247862
NSLW01000014
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
2407
2481
+
Arg
CCT
[ENA]
¡û
>W1911247894
NSLX01000011
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
2334
2408
+
Arg
CCT
[ENA]
¡û
>C151089067
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
729200
729126
-
Arg
CCT
-
¡û
>C151089114
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
662490
662416
-
Arg
CCT
-
¡û
>C161046927
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1229356
1229430
+
Arg
CCT
-
¡û
>C161051800
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
690828
690754
-
Arg
CCT
-
¡û
>W121073541
AJZS01000003
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
2283
2357
+
Arg
CCT
[ENA]
¡û
>W1710017908
ASYN01000015
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
2098
2172
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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