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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.388961 (23 seq.)
>WENV180103323
OAPA01015905
[OAPA] marine metagenome; ENVO:00002010
234
308
+
Asn
GTT
[ENA]
¢þ
>WENV180106031
OAPE01014300
[OAPE] marine metagenome; Sterivex cartridges
468
542
+
Asn
GTT
[ENA]
¢þ
>WENV180362641
OBNX01012713
[OBNX] marine metagenome; ENVO:00002010
294
220
-
Asn
GTT
[ENA]
¢þ
>WENV180382464
OBOT01010065
[OBOT] marine metagenome; 0
376
302
-
Asn
GTT
[ENA]
¢þ
>WENV180399891
OBQO01067091
[OBQO] marine metagenome; ENVO:00002010
206
132
-
Asn
GTT
[ENA]
¢þ
>WENV180588463
OCOP01063581
[OCOP] marine metagenome; water
391
317
-
Asn
GTT
[ENA]
¢þ
>WENV180592643
OCOW01028962
[OCOW] marine metagenome; Sterivex cartridges
297
223
-
Asn
GTT
[ENA]
¢þ
>WENV180650316
OCSY01006446
[OCSY] marine metagenome; 30 L Plastic container
178
252
+
Asn
GTT
[ENA]
¢þ
>WENV181391416
OFRT01005278
[OFRT] seawater metagenome; seawater
525
451
-
Asn
GTT
[ENA]
¢þ
>WENV182078429
OHFZ01001235
[OHFZ] human gut metagenome; feces
136
62
-
Asn
GTT
[ENA]
¢þ
>WENV182169228
OHMU01000121
[OHMU] human gut metagenome; feces
38639
38565
-
Asn
GTT
[ENA]
¢þ
>WENV182173558
OHNC01000094
[OHNC] human gut metagenome; feces
761
835
+
Asn
GTT
[ENA]
¢þ
>WENV182189856
OHOP01000121
[OHOP] human gut metagenome; feces
38639
38565
-
Asn
GTT
[ENA]
¢þ
>WENV182210496
OHQD01000064
[OHQD] human gut metagenome; feces
740
814
+
Asn
GTT
[ENA]
¢þ
>WENV182590445
OJII01003043
[OJII] seawater metagenome; Sea water
280
354
+
Asn
GTT
[ENA]
¢þ
>WENV182906912
OKTE01000117
[OKTE] human gut metagenome; feces
38639
38565
-
Asn
GTT
[ENA]
¢þ
>WENV183620211
OOFR01014841
[OOFR] marine metagenome; seawater
438
512
+
Asn
GTT
[ENA]
¢þ
>WENV183625304
OOGF01010907
[OOGF] marine metagenome; seawater
354
280
-
Asn
GTT
[ENA]
¢þ
>WENV183628968
OOGP01000262
[OOGP] marine metagenome; seawater
292
366
+
Asn
GTT
[ENA]
¢þ
>WENV170535143
CEWP01029321
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
73
147
+
Asn
GTT
[ENA]
¢þ
>WENV170567417
FLMP01000398
[FLMP] seawater metagenome; seawater
9168
9094
-
Asn
GTT
[ENA]
¢þ
>WENV170786552
MDSV01005110
[MDSV] marine metagenome; seawater
803
877
+
Asn
GTT
[ENA]
¢þ
>WENV170901878
MDTD01177156
[MDTD] marine metagenome; seawater
3847
3918
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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