This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.389344 (52 seq.)
>W1711125415
LUNG01000073
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
3521
3447
-
Arg
CCG
[ENA]
¡û
>W1711125448
LUNH01000040
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
3521
3447
-
Arg
CCG
[ENA]
¡û
>W1711125492
LUNI01000019
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
224736
224810
+
Arg
CCG
[ENA]
¡û
>W1711183425
LWLA01000023
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
316443
316515
+
Arg
CCG
[ENA]
¡û
>W131229398
AUGT01000021
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
79530
79458
-
Arg
CCG
[ENA]
¡û
>C171109482
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
1665463
1665535
+
Arg
CCG
-
¡û
>WENV180028630
FTJE01292649
[FTJE] metagenome; soil
300
372
+
Arg
CCG
[ENA]
¢þ
>WENV180035033
FTKT01000306
[FTKT] metagenome; soil
18888
18960
+
Arg
CCG
[ENA]
¢þ
>WENV180343808
OBLK01098644
[OBLK] soil metagenome; Clay
95
168
+
Arg
CCG
[ENA]
¢þ
>WENV181292983
OFHF01056657
[OFHF] soil metagenome; Clay
160
233
+
Arg
CCG
[ENA]
¢þ
>WENV170728888
LULF01001937
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1948
2022
+
Arg
CCG
[ENA]
¢þ
>WENV170729638
LULG01000048
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
3521
3447
-
Arg
CCG
[ENA]
¢þ
>WENV170732452
LULJ01000005
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
3521
3447
-
Arg
CCG
[ENA]
¢þ
>WENV170736356
LULM01001576
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
4273
4347
+
Arg
CCG
[ENA]
¢þ
>WENV170758969
LUMS01000674
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
8356
8282
-
Arg
CCG
[ENA]
¢þ
>WENV170958003
MKWU01000402
[MKWU] sponge metagenome;
3624
3550
-
Arg
CCG
[ENA]
¢þ
>WENV170994428
MWWD01108925
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
192
118
-
Arg
CCG
[ENA]
¢þ
>C191132728
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1102876
1102804
-
Arg
CCG
-
¡û
>C191159915
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
2449634
2449706
+
Arg
CCG
-
¡û
>C191182475
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2419809
2419881
+
Arg
CCG
-
¡û
>W141755532
JNWQ01000004
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
40304
40232
-
Arg
CCG
[ENA]
¡û
>W141755631
JNWR01000019
Actinomycetota
Kitasatospora aureofaciens [JNWR]
157943
158015
+
Arg
CCG
[ENA]
¡û
>W141759678
JNZN01000648
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
3274
3346
+
Arg
CCG
[ENA]
¡û
>W141761741
JOAY01000002
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
126811
126739
-
Arg
CCG
[ENA]
¡û
>W141764987
JODB01001758
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
1628
1556
-
Arg
CCG
[ENA]
¡û
>W141770035
JOGF01000539
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
210
282
+
Arg
CCG
[ENA]
¡û
>W141770145
JOGH01000003
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
80092
80164
+
Arg
CCG
[ENA]
¡û
>W141774366
JOJA01000010
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
90954
90880
-
Arg
CCG
[ENA]
¡û
>W141818480
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
389082
389154
+
Arg
CCG
[ENA]
¡û
>W141820004
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
1392039
1391967
-
Arg
CCG
[ENA]
¡û
>W1911494794
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
2656094
2656166
+
Arg
CCG
[ENA]
¡û
>W1810073023
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
4911444
4911372
-
Arg
CCG
[ENA]
¡û
>W1810173031
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
5460710
5460638
-
Arg
CCG
[ENA]
¡û
>W1810684576
QKYN01000211
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
3801
3729
-
Arg
CCG
[ENA]
¡û
>W1810907970
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
6709861
6709789
-
Arg
CCG
[ENA]
¡û
>W1510013929
BBPL01000004
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
277660
277732
+
Arg
CCG
[ENA]
¡û
>W1510014116
BBPN01000053
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
8472
8544
+
Arg
CCG
[ENA]
¡û
>W1510014260
BBPP01000086
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
4887
4813
-
Arg
CCG
[ENA]
¡û
>W1510014326
BBPQ01000096
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
8504
8576
+
Arg
CCG
[ENA]
¡û
>C11117097
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
1747823
1747751
-
Arg
CCG
[Ensembl]
¡û
>W1511311646
JPRF01000368
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
8473
8545
+
Arg
CCG
[ENA]
¡û
>W1511590458
LBHA01000256
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
893
821
-
Arg
CCG
[ENA]
¡û
>W1511696805
LGDO01000358
Actinomycetota
Streptomyces sp. XY431 [LGDO]
45197
45269
+
Arg
CCG
[ENA]
¡û
>C161036407
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
1399165
1399091
-
Arg
CCG
[Ensembl]
¡û
>W1610050375
BBFU01000416
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
1008
936
-
Arg
CCG
[ENA]
¡û
>W1610068239
BCRE01000028
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
4704
4776
+
Arg
CCG
[ENA]
¡û
>W1610936348
LUNG01000073
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
3521
3447
-
Arg
CCG
[ENA]
¡û
>W1610936381
LUNH01000040
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
3521
3447
-
Arg
CCG
[ENA]
¡û
>W1610936425
LUNI01000019
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
224736
224810
+
Arg
CCG
[ENA]
¡û
>W1710046774
BBFU01000416
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
1008
936
-
Arg
CCG
[ENA]
¡û
>W1710065612
BCRE01000028
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
4704
4776
+
Arg
CCG
[ENA]
¡û
>W1710765812
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
480764
480692
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK