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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.389888 (129 seq.)
>W1711066702
LSDC01000038
Bacillota
Gemella haemolysans [LSDC]
997
923
-
Gly
GCC
[ENA]
¡û
>W1711938508
NARE01000002
Bacillota
Aerococcus urinae [NARE]
47714
47643
-
Gly
GCC
[ENA]
¡û
>W131225776
AUDW01000007
Bacillota
Gemella cuniculi DSM 15828 [AUDW]
100687
100613
-
Gly
GCC
[ENA]
¡û
>WENV180005518
FLRW01081015
[FLRW] metagenome; saliva
1164
1090
-
Gly
GCC
[ENA]
¢þ
>WENV180010265
FLSC01445857
[FLSC] metagenome; saliva
356
282
-
Gly
GCC
[ENA]
¢þ
>WENV180555559
OCJO01192554
[OCJO] human gut metagenome; human gut
101
175
+
Gly
GCC
[ENA]
¢þ
>WENV180696340
ODCT01000205
[ODCT] human metagenome; G_DNA_Buccal mucosa
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV180698378
ODDH01000013
[ODDH] human metagenome; G_DNA_Buccal mucosa
54650
54576
-
Gly
GCC
[ENA]
¢þ
>WENV180709231
ODFJ01037321
[ODFJ] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV180716196
ODFX01000369
[ODFX] human metagenome; G_DNA_Buccal mucosa
414
488
+
Gly
GCC
[ENA]
¢þ
>WENV180717019
ODGA01003126
[ODGA] human metagenome; G_DNA_Buccal mucosa
417
491
+
Gly
GCC
[ENA]
¢þ
>WENV180731873
ODGW01025712
[ODGW] human metagenome; G_DNA_Supragingival plaque
87
13
-
Gly
GCC
[ENA]
¢þ
>WENV180741050
ODHG01012946
[ODHG] human metagenome; G_DNA_Buccal mucosa
493
566
+
Gly
GCC
[ENA]
¢þ
>WENV180751663
ODHS01101180
[ODHS] human metagenome; G_DNA_Supragingival plaque
413
339
-
Gly
GCC
[ENA]
¢þ
>WENV180758243
ODHW01011982
[ODHW] human metagenome; G_DNA_Tongue dorsum
1072
1146
+
Gly
GCC
[ENA]
¢þ
>WENV180759330
ODHY01007383
[ODHY] human metagenome; G_DNA_Buccal mucosa
413
487
+
Gly
GCC
[ENA]
¢þ
>WENV180767586
ODIG01000216
[ODIG] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV180773067
ODII01002437
[ODII] human metagenome; G_DNA_Buccal mucosa
415
489
+
Gly
GCC
[ENA]
¢þ
>WENV180776424
ODIK01039840
[ODIK] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV180780049
ODIN01040147
[ODIN] human metagenome; G_DNA_Throat
402
328
-
Gly
GCC
[ENA]
¢þ
>WENV180789331
ODIS01463644
[ODIS] human metagenome; G_DNA_Supragingival plaque
65
136
+
Gly
GCC
[ENA]
¢þ
>WENV180791768
ODIV01007635
[ODIV] human metagenome; G_DNA_Buccal mucosa
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV180793698
ODIW01052877
[ODIW] human metagenome; G_DNA_Tongue dorsum
163
237
+
Gly
GCC
[ENA]
¢þ
>WENV180795182
ODIZ01047036
[ODIZ] human metagenome; G_DNA_Tongue dorsum
163
237
+
Gly
GCC
[ENA]
¢þ
>WENV180806424
ODJH01017770
[ODJH] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV180808072
ODJI01042800
[ODJI] human metagenome; G_DNA_Tongue dorsum
325
251
-
Gly
GCC
[ENA]
¢þ
>WENV180814235
ODJO01010539
[ODJO] human metagenome; G_DNA_Supragingival plaque
406
480
+
Gly
GCC
[ENA]
¢þ
>WENV180816847
ODJP01075457
[ODJP] human metagenome; G_DNA_Tongue dorsum
48
122
+
Gly
GCC
[ENA]
¢þ
>WENV180821616
ODJS01026610
[ODJS] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV180823714
ODJW01125660
[ODJW] human metagenome; G_DNA_Supragingival plaque
19
93
+
Gly
GCC
[ENA]
¢þ
>WENV180824709
ODJX01030325
[ODJX] human metagenome; G_DNA_Supragingival plaque
97
23
-
Gly
GCC
[ENA]
¢þ
>WENV180833219
ODKC01020741
[ODKC] human metagenome; G_DNA_Supragingival plaque
323
397
+
Gly
GCC
[ENA]
¢þ
>WENV180836218
ODKE01068300
[ODKE] human metagenome; G_DNA_Supragingival plaque
327
253
-
Gly
GCC
[ENA]
¢þ
>WENV180841579
ODKK01000212
[ODKK] human metagenome; G_DNA_Buccal mucosa
16180
16106
-
Gly
GCC
[ENA]
¢þ
>WENV180847081
ODKT01040983
[ODKT] human metagenome; G_DNA_Supragingival plaque
406
480
+
Gly
GCC
[ENA]
¢þ
>WENV180857169
ODLA01007344
[ODLA] human metagenome; G_DNA_Buccal mucosa
430
356
-
Gly
GCC
[ENA]
¢þ
>WENV180862139
ODLE01037721
[ODLE] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV180863221
ODLG01006210
[ODLG] human metagenome; G_DNA_Buccal mucosa
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV180866585
ODLJ01037749
[ODLJ] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV180878260
ODLV01030270
[ODLV] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV180880781
ODLZ01058852
[ODLZ] human metagenome; G_DNA_Tongue dorsum
305
231
-
Gly
GCC
[ENA]
¢þ
>WENV180882082
ODMB01008767
[ODMB] human metagenome; G_DNA_Buccal mucosa
432
358
-
Gly
GCC
[ENA]
¢þ
>WENV180884229
ODMC01064250
[ODMC] human metagenome; G_DNA_Tongue dorsum
325
251
-
Gly
GCC
[ENA]
¢þ
>WENV180891016
ODMO01036160
[ODMO] human metagenome; G_DNA_Tongue dorsum
324
250
-
Gly
GCC
[ENA]
¢þ
>WENV180901133
ODOJ01040830
[ODOJ] human metagenome; G_DNA_Tongue dorsum
181
255
+
Gly
GCC
[ENA]
¢þ
>WENV180920455
ODTH01006307
[ODTH] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV180930181
ODTO01000010
[ODTO] human metagenome; G_DNA_Buccal mucosa
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV180933042
ODTQ01004604
[ODTQ] human metagenome; G_DNA_Buccal mucosa
943
869
-
Gly
GCC
[ENA]
¢þ
>WENV180934288
ODTR01084351
[ODTR] human metagenome; G_DNA_Supragingival plaque
170
96
-
Gly
GCC
[ENA]
¢þ
>WENV180935149
ODTS01076493
[ODTS] human metagenome; G_DNA_Subgingival plaque
284
210
-
Gly
GCC
[ENA]
¢þ
>WENV180947269
ODUF01000013
[ODUF] human metagenome; G_DNA_Supragingival plaque
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV180953217
ODUI01015078
[ODUI] human metagenome; G_DNA_Tongue dorsum
1428
1354
-
Gly
GCC
[ENA]
¢þ
>WENV180958390
ODUL01003745
[ODUL] human metagenome; G_DNA_Supragingival plaque
3683
3757
+
Gly
GCC
[ENA]
¢þ
>WENV180960412
ODUM01030083
[ODUM] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV180974483
ODUX01004016
[ODUX] human metagenome; G_DNA_Buccal mucosa
1017
943
-
Gly
GCC
[ENA]
¢þ
>WENV180978223
ODUZ01030093
[ODUZ] human metagenome; G_DNA_Tongue dorsum
346
272
-
Gly
GCC
[ENA]
¢þ
>WENV180979467
ODVC01000204
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
50171
50097
-
Gly
GCC
[ENA]
¢þ
>WENV180984143
ODVF01129383
[ODVF] human metagenome; G_DNA_Supragingival plaque
191
117
-
Gly
GCC
[ENA]
¢þ
>WENV180991958
ODVO01013295
[ODVO] human metagenome; G_DNA_Buccal mucosa
414
488
+
Gly
GCC
[ENA]
¢þ
>WENV181001682
ODVW01004443
[ODVW] human metagenome; G_DNA_Buccal mucosa
916
842
-
Gly
GCC
[ENA]
¢þ
>WENV181002953
ODVX01002978
[ODVX] human metagenome; G_DNA_Supragingival plaque
5319
5245
-
Gly
GCC
[ENA]
¢þ
>WENV181009540
ODWE01097069
[ODWE] human metagenome; G_DNA_Supragingival plaque
13
87
+
Gly
GCC
[ENA]
¢þ
>WENV181011443
ODWI01032180
[ODWI] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV181017217
ODWR01037150
[ODWR] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV181017762
ODWS01006120
[ODWS] human metagenome; G_DNA_Buccal mucosa
267
193
-
Gly
GCC
[ENA]
¢þ
>WENV181044322
ODXV01006220
[ODXV] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV181059881
ODYM01016411
[ODYM] human metagenome; G_DNA_Tongue dorsum
994
920
-
Gly
GCC
[ENA]
¢þ
>WENV181064573
ODYP01049797
[ODYP] human metagenome; G_DNA_Supragingival plaque
408
482
+
Gly
GCC
[ENA]
¢þ
>WENV181084373
OEAV01174307
[OEAV] human metagenome; G_DNA_Supragingival plaque
145
219
+
Gly
GCC
[ENA]
¢þ
>WENV181087407
OEAY01037317
[OEAY] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV181097037
OECA01001789
[OECA] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV181108708
OEEJ01000198
[OEEJ] human metagenome; G_DNA_Tongue dorsum
412
486
+
Gly
GCC
[ENA]
¢þ
>WENV181124125
OEFQ01013257
[OEFQ] human metagenome; G_DNA_Supragingival plaque
429
503
+
Gly
GCC
[ENA]
¢þ
>WENV181130579
OEFY01025639
[OEFY] human metagenome; G_DNA_Throat
420
346
-
Gly
GCC
[ENA]
¢þ
>WENV181131225
OEGA01002573
[OEGA] human metagenome; G_DNA_Buccal mucosa
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV181151409
OEHW01049648
[OEHW] human metagenome; G_DNA_Tongue dorsum
348
274
-
Gly
GCC
[ENA]
¢þ
>WENV181153172
OEIA01025658
[OEIA] human metagenome; G_DNA_Supragingival plaque
405
331
-
Gly
GCC
[ENA]
¢þ
>WENV181159693
OEIK01000011
[OEIK] human metagenome; G_DNA_Supragingival plaque
120880
120806
-
Gly
GCC
[ENA]
¢þ
>WENV181176553
OEJR01011281
[OEJR] human metagenome; G_DNA_Saliva
905
979
+
Gly
GCC
[ENA]
¢þ
>W08004218
ABHH01000037
Bacillota
Carnobacterium sp. AT7 [ABHH]
16879
16808
-
Gly
GCC
[ENA]
¡û
>W08004246
ABHH01000043
Bacillota
Carnobacterium sp. AT7 [ABHH]
7409
7338
-
Gly
GCC
[ENA]
¡û
>W141146476
AWVP01000104
Bacillota
Gemella bergeri ATCC 700627 [AWVP]
137
211
+
Gly
GCC
[ENA]
¡û
>WENV181946439
OGZC01023935
[OGZC] human gut metagenome; faeces
918
992
+
Gly
GCC
[ENA]
¢þ
>WENV181953981
OGZI01081331
[OGZI] human gut metagenome; faeces
235
309
+
Gly
GCC
[ENA]
¢þ
>WENV181980305
OHAF01017912
[OHAF] human gut metagenome; faeces
162
236
+
Gly
GCC
[ENA]
¢þ
>WENV182412836
OIFW01000509
[OIFW] human gut metagenome; stool
577
651
+
Gly
GCC
[ENA]
¢þ
>WENV183510033
OMHL01003146
[OMHL] human oral metagenome; human oral
17
91
+
Gly
GCC
[ENA]
¢þ
>C181070014
CP022615
Bacillota
Gemella sp. ND 6198 [CP022615]
713668
713742
+
Gly
GCC
-
¡û
>C181074327
CP022983
Bacillota
Cytobacillus kochii BDGP4 [CP022983]
2826307
2826381
+
Gly
GCC
-
¡û
>C181074350
CP022983
Bacillota
Cytobacillus kochii BDGP4 [CP022983]
3015429
3015503
+
Gly
GCC
-
¡û
>C181074376
CP022983
Bacillota
Cytobacillus kochii BDGP4 [CP022983]
1992547
1992473
-
Gly
GCC
-
¡û
>C181074415
CP022983
Bacillota
Cytobacillus kochii BDGP4 [CP022983]
628772
628698
-
Gly
GCC
-
¡û
>C181185248
CP029797
Bacillota
Paraliobacillus zengyii X-1125 [CP029797]
131640
131714
+
Gly
GCC
-
¡û
>C181213456
LS483440
Bacillota
Gemella morbillorum NCTC11323 [LS483440]
205853
205927
+
Gly
GCC
-
¡û
>C191155396
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
2345616
2345687
+
Gly
GCC
-
¡û
>C191155415
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
1310182
1310111
-
Gly
GCC
-
¡û
>C191155419
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
1309725
1309654
-
Gly
GCC
-
¡û
>C191211976
LR134484
Bacillota
Gemella haemolysans NCTC10459 [LR134484]
228877
228951
+
Gly
GCC
-
¡û
>W09119651
ACDZ02000005
Bacillota
Gemella haemolysans ATCC 10379 [ACDZ]
3585
3659
+
Gly
GCC
[ENA]
¡û
>W141731947
JNJO01000028
Bacillota
Gemella sanguinis ATCC 700632 [JNJO]
9845
9771
-
Gly
GCC
[ENA]
¡û
>W141815471
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
1914039
1914110
+
Gly
GCC
[ENA]
¡û
>W141815488
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
2261176
2261247
+
Gly
GCC
[ENA]
¡û
>W141818060
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1270258
1270329
+
Gly
GCC
[ENA]
¡û
>W141818077
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1619012
1619083
+
Gly
GCC
[ENA]
¡û
>W141818667
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2443617
2443546
-
Gly
GCC
[ENA]
¡û
>W141818684
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2104823
2104752
-
Gly
GCC
[ENA]
¡û
>W1910270942
FQLS01000005
Bacillota
Gemella massiliensis Marseille-P3249 [FQLS]
171203
171277
+
Gly
GCC
[ENA]
¡û
>C141008717
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
149022
149093
+
Gly
GCC
[Ensembl]
¡û
>C141008734
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
467411
467482
+
Gly
GCC
[Ensembl]
¡û
>W1810149086
PISD01000089
Bacillota
Cytobacillus horneckiae 1P01SC [PISD]
516
590
+
Gly
GCC
[ENA]
¡û
>W1810703114
QMGT01000008
Bacillota
Aerococcus mictus UMB0071 [QMGT]
20367
20438
+
Gly
GCC
[ENA]
¡û
>W1810703248
QMGW01000003
Bacillota
Aerococcus tenax UMB0337 [QMGW]
161355
161426
+
Gly
GCC
[ENA]
¡û
>W1810703299
QMGX01000001
Bacillota
Aerococcus urinae UMB0509 [QMGX]
336584
336655
+
Gly
GCC
[ENA]
¡û
>W1810703377
QMGY01000003
Bacillota
Aerococcus urinae UMB0553 [QMGY]
366948
367019
+
Gly
GCC
[ENA]
¡û
>W1810703435
QMGZ01000003
Bacillota
Aerococcus urinae UMB0574 [QMGZ]
366256
366327
+
Gly
GCC
[ENA]
¡û
>W1810703557
QMHB01000002
Bacillota
Aerococcus urinae UMB0722 [QMHB]
47912
47841
-
Gly
GCC
[ENA]
¡û
>W1810703867
QMHG01000012
Bacillota
Aerococcus mictus UMB2879 [QMHG]
23677
23748
+
Gly
GCC
[ENA]
¡û
>W1810703917
QMHH01000003
Bacillota
Aerococcus urinae UMB3440 [QMHH]
24330
24259
-
Gly
GCC
[ENA]
¡û
>W1810703997
QMHJ01000003
Bacillota
Aerococcus loyolae UMB5628 [QMHJ]
48104
48033
-
Gly
GCC
[ENA]
¡û
>W1810704045
QMHK01000002
Bacillota
Aerococcus mictus UMB6497 [QMHK]
47157
47086
-
Gly
GCC
[ENA]
¡û
>W1810704161
QMHM01000004
Bacillota
Aerococcus loyolae UMB7480 [QMHM]
127775
127846
+
Gly
GCC
[ENA]
¡û
>C11101340
CP002512
Bacillota
Aerococcus sp. Group 1 ACS-120-V-Col10a [CP002512]
422061
422132
+
Gly
GCC
[Ensembl]
¡û
>W11104269
ACRO01000021
Bacillota
Gemella haemolysans M341 [ACRO]
38357
38283
-
Gly
GCC
[ENA]
¡û
>W1511439614
JUOB01000130
Bacillota
Staphylococcus pasteuri 915_SPAS [JUOB]
169
243
+
Gly
GCC
[ENA]
¡û
>W1511475412
JWDE01000070
Bacillota
Gemella sanguinis 1094_BTHU [JWDE]
171
245
+
Gly
GCC
[ENA]
¡û
>C161069171
CP014233
Bacillota
Gemella sp. oral taxon 928 W2231 [CP014233]
335544
335618
+
Gly
GCC
[Ensembl]
¡û
>W1610907272
LSDC01000038
Bacillota
Gemella haemolysans [LSDC]
997
923
-
Gly
GCC
[ENA]
¡û
>W1710572982
FOXC01000025
Bacillota
Halolactibacillus halophilus [FOXC]
1380
1454
+
Gly
GCC
[ENA]
¡û
>W1710573011
FOXC01000091
Bacillota
Halolactibacillus halophilus [FOXC]
667
741
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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