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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391151 (16 seq.)
>W1711073894
LSJA01000251
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
22187
22261
+
Val
TAC
[ENA]
¡û
>C005371
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
2154567
2154493
-
Val
TAC
[Ensembl]
¡û
>WENV180017564
FSXI01000164
[FSXI] metagenome; soil
41497
41568
+
Val
TAC
[ENA]
¢þ
>WENV180017575
FSXI01000302
[FSXI] metagenome; soil
17838
17909
+
Val
TAC
[ENA]
¢þ
>WENV180020658
FTCZ01007961
[FTCZ] metagenome; soil
1763
1837
+
Val
TAC
[ENA]
¢þ
>WENV181223137
OFDC01002278
[OFDC] hot springs metagenome; Water
1720
1794
+
Val
TAC
[ENA]
¢þ
>WENV181227587
OFDN01019809
[OFDN] hot springs metagenome; Water
1310
1236
-
Val
TAC
[ENA]
¢þ
>WENV183697633
OUNK010006077
[OUNK] metagenome; soil
98
27
-
Val
TAC
[ENA]
¢þ
>WENV183697658
OUNK010011106
[OUNK] metagenome; soil
2361
2290
-
Val
TAC
[ENA]
¢þ
>C181078858
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
2231286
2231212
-
Val
TAC
-
¡û
>C181078958
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
2194345
2194271
-
Val
TAC
-
¡û
>C181081615
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
3997063
3996989
-
Val
TAC
-
¡û
>C191114311
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
2373417
2373343
-
Val
TAC
-
¡û
>W1911411152
NWUF01000012
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
6488
6414
-
Val
TAC
[ENA]
¡û
>W1810073539
PEGH01000007
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
35994
36068
+
Val
TAC
[ENA]
¡û
>W1610913199
LSJA01000251
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
22187
22261
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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