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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391923 (19 seq.)
>W1710934848
LOJP01000002
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
73293
73367
+
Arg
CCG
[ENA]
¡û
>W131165170
ARBJ01000023
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
73761
73835
+
Arg
CCG
[ENA]
¡û
>C171131309
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
8276145
8276219
+
Arg
CCG
-
¡û
>WENV183092664
OLLI01000873
[OLLI] soil metagenome; soil
3023
3097
+
Arg
CCG
[ENA]
¢þ
>WENV183748850
PPFU01088452
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1119
1046
-
Arg
CCG
[ENA]
¢þ
>C181078593
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
8275459
8275531
+
Arg
CCG
-
¡û
>C181144026
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
2603511
2603585
+
Arg
CCG
-
¡û
>W141757558
JNXY01000039
Actinomycetota
Catenuloplanes japonicus [JNXY]
162579
162651
+
Arg
CCG
[ENA]
¡û
>W141758290
JNYN01000078
Actinomycetota
Actinoplanes liguriensis [JNYN]
5779
5853
+
Arg
CCG
[ENA]
¡û
>W141758641
JNYT01000055
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
2731
2659
-
Arg
CCG
[ENA]
¡û
>C141004735
CP006272
Actinomycetota
Actinoplanes friuliensis DSM 7358 [CP006272]
8191735
8191807
+
Arg
CCG
[Ensembl]
¡û
>W1910547301
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
801878
801950
+
Arg
CCG
[ENA]
¡û
>W1810368133
PVZG01000003
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
311046
311119
+
Arg
CCG
[ENA]
¡û
>W1810596605
QGGR01000003
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
459609
459681
+
Arg
CCG
[ENA]
¡û
>W1810694925
QLMJ01000013
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
254758
254686
-
Arg
CCG
[ENA]
¡û
>C121001055
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7831859
7831785
-
Arg
CCG
[Ensembl]
¡û
>W1610052494
BBHY01000154
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
682
754
+
Arg
CCG
[ENA]
¡û
>W1610792336
LOJP01000002
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
73293
73367
+
Arg
CCG
[ENA]
¡û
>W1710048872
BBHY01000154
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
682
754
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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