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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.393731 (28 seq.)
>W1711345221
MCNR01000005
Bacillota
Ligilactobacillus animalis [MCNR]
2101
2176
+
Glu
TTC
[ENA]
¡û
>W1711940853
NAUG01000012
Bacillota
Listeria monocytogenes [NAUG]
201
272
+
Glu
TTC
[ENA]
¡û
>W1711941033
NAUJ01000007
Bacillota
Listeria monocytogenes [NAUJ]
291
362
+
Glu
TTC
[ENA]
¡û
>W1711941043
NAUJ01000007
Bacillota
Listeria monocytogenes [NAUJ]
180895
180824
-
Glu
TTC
[ENA]
¡û
>C171036800
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
1270755
1270684
-
Glu
TTC
-
¡û
>WENV181203662
OERW01008703
[OERW] metagenome; Caecal content
762
836
+
Glu
TTC
[ENA]
¢þ
>WENV181733917
OGQE01027994
[OGQE] human gut metagenome; faeces
874
948
+
Glu
TTC
[ENA]
¢þ
>WENV183762109
PPYE01275132
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
186900
186971
+
Glu
TTC
[ENA]
¢þ
>C191002822
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
1849295
1849222
-
Glu
TTC
-
¡û
>C191002834
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
1403878
1403803
-
Glu
TTC
-
¡û
>W141818637
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
1185770
1185845
+
Glu
TTC
[ENA]
¡û
>W141818649
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
1195019
1195094
+
Glu
TTC
[ENA]
¡û
>W141818674
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2354950
2354877
-
Glu
TTC
[ENA]
¡û
>W141818697
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2103508
2103437
-
Glu
TTC
[ENA]
¡û
>W141818704
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2102820
2102745
-
Glu
TTC
[ENA]
¡û
>W1910611672
LFJM01000018
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
1849
1923
+
Glu
TTC
[ENA]
¡û
>W1911442969
NXTI01000006
Bacillota
Listeria monocytogenes CFSAN046013 [NXTI]
254859
254788
-
Glu
TTC
[ENA]
¡û
>W1911452981
NYAV01000010
Bacillota
Listeria monocytogenes CFSAN044855 [NYAV]
254695
254624
-
Glu
TTC
[ENA]
¡û
>W1911453093
NYAX01000009
Bacillota
Listeria monocytogenes CFSAN044853 [NYAX]
254860
254789
-
Glu
TTC
[ENA]
¡û
>W1911454335
NYBV01000002
Bacillota
Listeria monocytogenes CFSAN044811 [NYBV]
232
303
+
Glu
TTC
[ENA]
¡û
>W1511361056
JSAX01000005
Bacillota
Melissococcus plutonius 765-6B [JSAX]
47135
47060
-
Glu
TTC
[ENA]
¡û
>W1511361338
JSBD01000006
Bacillota
Melissococcus plutonius L9 [JSBD]
125673
125598
-
Glu
TTC
[ENA]
¡û
>W1511361359
JSBD01000009
Bacillota
Melissococcus plutonius L9 [JSBD]
517
444
-
Glu
TTC
[ENA]
¡û
>C121000837
AP012282
Bacillota
Melissococcus plutonius DAT561 [AP012282]
304840
304911
+
Glu
TTC
[Ensembl]
¡û
>C121000841
AP012282
Bacillota
Melissococcus plutonius DAT561 [AP012282]
699782
699857
+
Glu
TTC
[Ensembl]
¡û
>C161004048
CP006683
Bacillota
Melissococcus plutonius S1 [CP006683]
1855213
1855140
-
Glu
TTC
[Ensembl]
¡û
>C161004060
CP006683
Bacillota
Melissococcus plutonius S1 [CP006683]
1445513
1445438
-
Glu
TTC
[Ensembl]
¡û
>W1710058731
BCMJ01000013
Bacillota
Secundilactobacillus silagincola IWT5 [BCMJ]
507
580
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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