This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.395846 (38 seq.)
>W1711054884
LRUD01000069
Alphaproteobacteria
Celeribacter halophilus [LRUD]
11346
11420
+
Val
GAC
[ENA]
¡û
>WENV180103476
OAPA01045761
[OAPA] marine metagenome; ENVO:00002010
411
337
-
Val
GAC
[ENA]
¢þ
>WENV180394583
OBPS01021055
[OBPS] marine metagenome; ENVO:00002010 seawater
458
532
+
Val
GAC
[ENA]
¢þ
>W08005825
ABIE01000019
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
34504
34433
-
Val
GAC
[ENA]
¡û
>W08005871
ABIF01000009
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
141483
141557
+
Val
GAC
[ENA]
¡û
>W141230442
BATB01000051
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
14255
14329
+
Val
GAC
[ENA]
¡û
>WENV182549145
OJBX01026288
[OJBX] seawater metagenome; Sea water
666
740
+
Val
GAC
[ENA]
¢þ
>WENV182591844
OJIO01007480
[OJIO] seawater metagenome; Sea water
722
796
+
Val
GAC
[ENA]
¢þ
>WENV170016103
AZIJ01012633
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
388
314
-
Val
GAC
[ENA]
¢þ
>WENV170260352
CEQZ01016143
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
959
885
-
Val
GAC
[ENA]
¢þ
>WENV170269114
CERH01049519
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
706
780
+
Val
GAC
[ENA]
¢þ
>WENV170668378
LADL02003416
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
996
1070
+
Val
GAC
[ENA]
¢þ
>WENV170742268
LULU01007705
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
1639
1565
-
Val
GAC
[ENA]
¢þ
>WENV170897966
MDTD01119145
[MDTD] marine metagenome; seawater
1156
1230
+
Val
GAC
[ENA]
¢þ
>C181008440
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
3362849
3362923
+
Val
GAC
-
¡û
>C181009227
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
3187326
3187400
+
Val
GAC
-
¡û
>C181009457
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
3152564
3152638
+
Val
GAC
-
¡û
>C181009627
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
3303403
3303477
+
Val
GAC
-
¡û
>C181009684
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
3316068
3316142
+
Val
GAC
-
¡û
>C181049045
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
3292315
3292389
+
Val
GAC
-
¡û
>C181060569
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
2377039
2377113
+
Val
GAC
-
¡û
>W1910443277
FWFY01000002
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
528871
528797
-
Val
GAC
[ENA]
¡û
>W1911189710
NQWH01000015
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
82663
82589
-
Val
GAC
[ENA]
¡û
>W1911539801
ONZG01000001
Alphaproteobacteria
Falsiruegeria mediterranea M15O_3 CECT 7615 [ONZG]
35621
35695
+
Val
GAC
[ENA]
¡û
>W1810476820
QAOH01000010
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
115314
115240
-
Val
GAC
[ENA]
¡û
>C151006781
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
459569
459495
-
Val
GAC
[Ensembl]
¡û
>W1510650457
CVQZ01000029
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
151427
151353
-
Val
GAC
[ENA]
¡û
>W1511388804
JSWK01000003
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
190791
190717
-
Val
GAC
[ENA]
¡û
>W1511640247
LDPY01000001
Alphaproteobacteria
Puniceibacterium sp. IMCC21224 [LDPY]
3743526
3743600
+
Val
GAC
[ENA]
¡û
>W1610016174
AOQA01000011
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
426342
426268
-
Val
GAC
[ENA]
¡û
>W1610895930
LRUD01000069
Alphaproteobacteria
Celeribacter halophilus [LRUD]
11346
11420
+
Val
GAC
[ENA]
¡û
>W1710013065
AOQA01000011
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
426342
426268
-
Val
GAC
[ENA]
¡û
>W1710543587
FOAC01000001
Alphaproteobacteria
Roseovarius nanhaiticus [FOAC]
2096272
2096198
-
Val
GAC
[ENA]
¡û
>W1710543739
FOAG01000006
Alphaproteobacteria
Roseovarius azorensis [FOAG]
87188
87114
-
Val
GAC
[ENA]
¡û
>W1710566430
FORY01000021
Alphaproteobacteria
Celeribacter halophilus [FORY]
11630
11704
+
Val
GAC
[ENA]
¡û
>W1710587506
FQYO01000003
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
279446
279372
-
Val
GAC
[ENA]
¡û
>W1710591162
FRBN01000015
Alphaproteobacteria
Roseovarius marisflavi [FRBN]
32478
32552
+
Val
GAC
[ENA]
¡û
>W1710598191
FTNV01000001
Alphaproteobacteria
Roseovarius nanhaiticus [FTNV]
14806
14880
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK