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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.396365 (71 seq.)
>W1711146841
LVJF01000013
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
380
454
+
Glu
TTC
[ENA]
¡û
>W1711146859
LVJF01000014
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
30744
30818
+
Glu
TTC
[ENA]
¡û
>W1711146884
LVJF01000022
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
480
554
+
Glu
TTC
[ENA]
¡û
>W1711146895
LVJF01000025
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
288
362
+
Glu
TTC
[ENA]
¡û
>W1711146919
LVJF01000074
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
558
632
+
Glu
TTC
[ENA]
¡û
>W1711146932
LVJF01000075
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
689
763
+
Glu
TTC
[ENA]
¡û
>W131221511
AUAN01000004
Bacillota
Veillonella magna DSM 19857 [AUAN]
67957
67883
-
Glu
TTC
[ENA]
¡û
>W131221521
AUAN01000007
Bacillota
Veillonella magna DSM 19857 [AUAN]
25909
25835
-
Glu
TTC
[ENA]
¡û
>WENV180481304
OBZF01000004
[OBZF] human gut metagenome; faeces
714
640
-
Glu
TTC
[ENA]
¢þ
>WENV180481564
OBZF01000232
[OBZF] human gut metagenome; faeces
23749
23823
+
Glu
TTC
[ENA]
¢þ
>WENV180504920
OCAO01000197
[OCAO] human gut metagenome; faeces
16280
16206
-
Glu
TTC
[ENA]
¢þ
>WENV180930267
ODTO01001419
[ODTO] human metagenome; G_DNA_Buccal mucosa
692
766
+
Glu
TTC
[ENA]
¢þ
>WENV180979623
ODVC01000467
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
10758
10832
+
Glu
TTC
[ENA]
¢þ
>WENV180979648
ODVC01000507
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
10706
10780
+
Glu
TTC
[ENA]
¢þ
>WENV180979774
ODVC01001730
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
155
81
-
Glu
TTC
[ENA]
¢þ
>WENV181183711
OEJW01003225
[OEJW] human metagenome; G_DNA_Stool
2121
2047
-
Glu
TTC
[ENA]
¢þ
>WENV181187529
OENZ01000002
[OENZ] human gut metagenome; human gut
108319
108245
-
Glu
TTC
[ENA]
¢þ
>WENV181187650
OENZ01000054
[OENZ] human gut metagenome; human gut
75543
75617
+
Glu
TTC
[ENA]
¢þ
>WENV182350121
OIBE01010047
[OIBE] human gut metagenome; feces
189
115
-
Glu
TTC
[ENA]
¢þ
>WENV182941615
OKVG01003896
[OKVG] human gut metagenome; human gut
3100
3174
+
Glu
TTC
[ENA]
¢þ
>WENV183770495
PPYE01435332
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
178
104
-
Glu
TTC
[ENA]
¢þ
>W141731892
JNJN01000010
Bacillota
Agathobaculum desmolans ATCC 43058 [JNJN]
53451
53525
+
Glu
TTC
[ENA]
¡û
>W1910067552
BFDZ01000006
Bacillota
Sporomusaceae bacterium FL31 [BFDZ]
211212
211138
-
Glu
TTC
[ENA]
¡û
>W1910639032
LSLK01000117
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
246
320
+
Glu
TTC
[ENA]
¡û
>W1911608632
PNXQ01000010
Bacillota
Paenibacillus terrae PIC167 [PNXQ]
562
633
+
Glu
TTC
[ENA]
¡û
>W1911608646
PNXQ01000012
Bacillota
Paenibacillus terrae PIC167 [PNXQ]
547046
547117
+
Glu
TTC
[ENA]
¡û
>W1911608655
PNXQ01000016
Bacillota
Paenibacillus terrae PIC167 [PNXQ]
341079
341152
+
Glu
TTC
[ENA]
¡û
>W1911608667
PNXQ01000018
Bacillota
Paenibacillus terrae PIC167 [PNXQ]
218943
218870
-
Glu
TTC
[ENA]
¡û
>W1911771051
QXJM01000016
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
43561
43635
+
Glu
TTC
[ENA]
¡û
>W1911771072
QXJM01000039
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
1229990
1230064
+
Glu
TTC
[ENA]
¡û
>W1911771102
QXJM01000042
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
50551
50477
-
Glu
TTC
[ENA]
¡û
>W1810675970
QKLR01000002
Bacillota
Cohnella sp. OV312 [QKLR]
336
410
+
Glu
TTC
[ENA]
¡û
>W1810675982
QKLR01000006
Bacillota
Cohnella sp. OV312 [QKLR]
608
682
+
Glu
TTC
[ENA]
¡û
>W1810675999
QKLR01000006
Bacillota
Cohnella sp. OV312 [QKLR]
123488
123562
+
Glu
TTC
[ENA]
¡û
>W1510586053
CTRP01000002
Bacillota
Sporomusa ovata An4 [CTRP]
160283
160209
-
Glu
TTC
[ENA]
¡û
>W1510586101
CTRP01000014
Bacillota
Sporomusa ovata An4 [CTRP]
423346
423420
+
Glu
TTC
[ENA]
¡û
>W1510586125
CTRP01000014
Bacillota
Sporomusa ovata An4 [CTRP]
396887
396813
-
Glu
TTC
[ENA]
¡û
>W1510586144
CTRP01000014
Bacillota
Sporomusa ovata An4 [CTRP]
269216
269142
-
Glu
TTC
[ENA]
¡û
>W1510755255
CYSP01000001
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
231122
231196
+
Glu
TTC
[ENA]
¡û
>W1510755258
CYSP01000004
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
345
271
-
Glu
TTC
[ENA]
¡û
>W1510755264
CYSP01000007
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
192266
192340
+
Glu
TTC
[ENA]
¡û
>W1510755283
CYSP01000012
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
144132
144058
-
Glu
TTC
[ENA]
¡û
>W1511401478
JTHP01000002
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
218029
217958
-
Glu
TTC
[ENA]
¡û
>W1511401489
JTHP01000003
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
172275
172204
-
Glu
TTC
[ENA]
¡û
>W1511401505
JTHP01000045
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
520
591
+
Glu
TTC
[ENA]
¡û
>W1511401525
JTHP01000060
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
38709
38638
-
Glu
TTC
[ENA]
¡û
>W1511401537
JTHP01000066
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
209
282
+
Glu
TTC
[ENA]
¡û
>W11174065
AFUJ01000003
Bacillota
Veillonella sp. oral taxon 780 oral taxon 780 str. F0422 [AFUJ]
1374
1448
+
Glu
TTC
[ENA]
¡û
>W11174078
AFUJ01000016
Bacillota
Veillonella sp. oral taxon 780 oral taxon 780 str. F0422 [AFUJ]
98534
98608
+
Glu
TTC
[ENA]
¡û
>C161052961
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
3402164
3402235
+
Glu
TTC
-
¡û
>C161052972
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
3722895
3722968
+
Glu
TTC
-
¡û
>C161052988
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
4062267
4062338
+
Glu
TTC
-
¡û
>C161053016
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
2175353
2175282
-
Glu
TTC
-
¡û
>C161053035
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
1109519
1109448
-
Glu
TTC
-
¡û
>W121101504
AKVJ01000006
Bacillota
Pelosinus fermentans B4 [AKVJ]
36974
36900
-
Glu
TTC
[ENA]
¡û
>W121101746
AKVO01000024
Bacillota
Pelosinus fermentans JBW45 [AKVO]
11663
11589
-
Glu
TTC
[ENA]
¡û
>W1610957738
LVJF01000013
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
380
454
+
Glu
TTC
[ENA]
¡û
>W1610957756
LVJF01000014
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
30744
30818
+
Glu
TTC
[ENA]
¡û
>W1610957781
LVJF01000022
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
480
554
+
Glu
TTC
[ENA]
¡û
>W1610957792
LVJF01000025
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
288
362
+
Glu
TTC
[ENA]
¡û
>W1610957816
LVJF01000074
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
558
632
+
Glu
TTC
[ENA]
¡û
>W1610957829
LVJF01000075
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
689
763
+
Glu
TTC
[ENA]
¡û
>W1710556373
FOKE01000003
Bacillota
Cohnella sp. OV330 [FOKE]
473
547
+
Glu
TTC
[ENA]
¡û
>W1710556385
FOKE01000005
Bacillota
Cohnella sp. OV330 [FOKE]
527197
527123
-
Glu
TTC
[ENA]
¡û
>W1710556402
FOKE01000005
Bacillota
Cohnella sp. OV330 [FOKE]
404317
404243
-
Glu
TTC
[ENA]
¡û
>W1710568578
FOTS01000022
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
10302
10228
-
Glu
TTC
[ENA]
¡û
>W1710588159
FQZD01000004
Bacillota
Propionispora hippei DSM 15287 [FQZD]
228562
228636
+
Glu
TTC
[ENA]
¡û
>W1710588190
FQZD01000046
Bacillota
Propionispora hippei DSM 15287 [FQZD]
25575
25501
-
Glu
TTC
[ENA]
¡û
>W1710588197
FQZD01000050
Bacillota
Propionispora hippei DSM 15287 [FQZD]
22070
21996
-
Glu
TTC
[ENA]
¡û
>W1710588210
FQZD01000052
Bacillota
Propionispora hippei DSM 15287 [FQZD]
359
285
-
Glu
TTC
[ENA]
¡û
>W1710588216
FQZD01000059
Bacillota
Propionispora hippei DSM 15287 [FQZD]
16989
17063
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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