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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3991 (16 seq.)
>W1711068939
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182767
182674
-
Ser
GGA
[ENA]
¡û
>C171119457
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
623818
623911
+
Ser
GGA
-
¡û
>C171126475
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
613252
613345
+
Ser
GGA
-
¡û
>C017445
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1210471
1210380
-
Ser
GGA
[Ensembl]
¡û
>WENV180279495
OBHX01043215
[OBHX] metagenome; feces
639
732
+
Ser
GGA
[ENA]
¢þ
>WENV180350026
OBLO01242895
[OBLO] metagenome; feces
146
239
+
Ser
GGA
[ENA]
¢þ
>WENV170659302
JXWR01003231
[JXWR] soil metagenome; rice field; ambient CO2
585
678
+
Ser
GGA
[ENA]
¢þ
>WENV170659309
JXWR01003232
[JXWR] soil metagenome; rice field; ambient CO2
232
325
+
Ser
GGA
[ENA]
¢þ
>C191023256
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1131113
1131020
-
Ser
GGA
-
¡û
>W09101463
AAEV01000008
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
68026
67933
-
Ser
GGA
[ENA]
¡û
>C141009514
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1174417
1174324
-
Ser
GGA
[Ensembl]
¡û
>W1911631249
PUFB01000004
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
247
340
+
Ser
GGA
[ENA]
¡û
>W1810000819
BEWQ01000002
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
12
105
+
Ser
GGA
[ENA]
¡û
>C161092324
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
861349
861442
+
Ser
GGA
[Ensembl]
¡û
>W1610650090
LJIU01000006
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
29611
29518
-
Ser
GGA
[ENA]
¡û
>W1610909509
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182767
182674
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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