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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399106 (103 seq.)
>W1710885349
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
226280
226207
-
Gln
CTG
[ENA]
¡û
>W1711612509
MOWQ01000032
Bacillota
Leuconostoc sp. BM2 [MOWQ]
7959
8032
+
Gln
CTG
[ENA]
¡û
>W1711617421
MPAL01000021
Bacillota
Leuconostoc pseudomesenteroides [MPAL]
7831
7904
+
Gln
CTG
[ENA]
¡û
>W1711617478
MPAM01000051
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
1444
1371
-
Gln
CTG
[ENA]
¡û
>W1711617525
MPAN01000054
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
1444
1371
-
Gln
CTG
[ENA]
¡û
>W1711617575
MPAO01000052
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
8946
9019
+
Gln
CTG
[ENA]
¡û
>W1711617626
MPAP01000055
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
1352
1279
-
Gln
CTG
[ENA]
¡û
>W1711617654
MPAQ01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
1444
1371
-
Gln
CTG
[ENA]
¡û
>W1711617694
MPAR01000008
Bacillota
Leuconostoc pseudomesenteroides [MPAR]
26443
26370
-
Gln
CTG
[ENA]
¡û
>W1711617748
MPAS01000007
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
1533
1460
-
Gln
CTG
[ENA]
¡û
>W1711617802
MPAT01000006
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
2236
2163
-
Gln
CTG
[ENA]
¡û
>W1711617848
MPAU01000007
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
1548
1475
-
Gln
CTG
[ENA]
¡û
>W1711618146
MPBA01000020
Bacillota
Leuconostoc pseudomesenteroides [MPBA]
7842
7915
+
Gln
CTG
[ENA]
¡û
>W1711618200
MPBB01000029
Bacillota
Leuconostoc pseudomesenteroides [MPBB]
12632
12559
-
Gln
CTG
[ENA]
¡û
>W1711618217
MPBC01000007
Bacillota
Leuconostoc pseudomesenteroides [MPBC]
12658
12585
-
Gln
CTG
[ENA]
¡û
>W1711618298
MPBD01000020
Bacillota
Leuconostoc pseudomesenteroides [MPBD]
7842
7915
+
Gln
CTG
[ENA]
¡û
>W1711622364
MPEA01000059
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
1484
1411
-
Gln
CTG
[ENA]
¡û
>W1711622403
MPEB01000070
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
40680
40753
+
Gln
CTG
[ENA]
¡û
>W1711622462
MPEC01000022
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
18912
18985
+
Gln
CTG
[ENA]
¡û
>W1711622509
MPED01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
1548
1475
-
Gln
CTG
[ENA]
¡û
>W1711622570
MPEE01000020
Bacillota
Leuconostoc pseudomesenteroides [MPEE]
25678
25605
-
Gln
CTG
[ENA]
¡û
>W1711622617
MPEF01000022
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
1844
1771
-
Gln
CTG
[ENA]
¡û
>W1711622656
MPEG01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
1843
1770
-
Gln
CTG
[ENA]
¡û
>W1711622690
MPEH01000006
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
1675
1602
-
Gln
CTG
[ENA]
¡û
>W1711622754
MPEI01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
2236
2163
-
Gln
CTG
[ENA]
¡û
>W1711622804
MPEJ01000007
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
2236
2163
-
Gln
CTG
[ENA]
¡û
>W1711624825
MPHN01000006
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
47378
47451
+
Gln
CTG
[ENA]
¡û
>W1711624868
MPHO01000011
Bacillota
Leuconostoc pseudomesenteroides [MPHO]
2729
2656
-
Gln
CTG
[ENA]
¡û
>W1711624932
MPHP01000034
Bacillota
Leuconostoc pseudomesenteroides [MPHP]
12034
11961
-
Gln
CTG
[ENA]
¡û
>W1711624969
MPHQ01000029
Bacillota
Leuconostoc pseudomesenteroides [MPHQ]
12701
12628
-
Gln
CTG
[ENA]
¡û
>W1711625008
MPHR01000008
Bacillota
Leuconostoc pseudomesenteroides [MPHR]
25636
25563
-
Gln
CTG
[ENA]
¡û
>W1711625068
MPHS01000020
Bacillota
Leuconostoc pseudomesenteroides [MPHS]
25678
25605
-
Gln
CTG
[ENA]
¡û
>W1711625111
MPHT01000005
Bacillota
Leuconostoc pseudomesenteroides [MPHT]
35043
35116
+
Gln
CTG
[ENA]
¡û
>W1711625159
MPHU01000009
Bacillota
Leuconostoc pseudomesenteroides [MPHU]
33370
33297
-
Gln
CTG
[ENA]
¡û
>W1711627125
MPLF01000032
Bacillota
Leuconostoc pseudomesenteroides [MPLF]
7959
8032
+
Gln
CTG
[ENA]
¡û
>W1711627170
MPLG01000023
Bacillota
Leuconostoc pseudomesenteroides [MPLG]
25670
25597
-
Gln
CTG
[ENA]
¡û
>W1711627202
MPLH01000037
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
15771
15698
-
Gln
CTG
[ENA]
¡û
>W1711627257
MPLI01000007
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
40982
41055
+
Gln
CTG
[ENA]
¡û
>W1711627287
MPLJ01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
56437
56364
-
Gln
CTG
[ENA]
¡û
>W1711627353
MPLK01000019
Bacillota
Leuconostoc pseudomesenteroides [MPLK]
25694
25621
-
Gln
CTG
[ENA]
¡û
>W1711627462
MPLM01000022
Bacillota
Leuconostoc pseudomesenteroides [MPLM]
7832
7905
+
Gln
CTG
[ENA]
¡û
>W1711627566
MPLO01000008
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
49758
49831
+
Gln
CTG
[ENA]
¡û
>W1711627581
MPLP01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
294856
294929
+
Gln
CTG
[ENA]
¡û
>W1711627650
MPLQ01000009
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
1581
1508
-
Gln
CTG
[ENA]
¡û
>W1711627727
MPLR01000031
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
17479
17552
+
Gln
CTG
[ENA]
¡û
>W1711627766
MPLS01000020
Bacillota
Leuconostoc pseudomesenteroides [MPLS]
25678
25605
-
Gln
CTG
[ENA]
¡û
>C171019420
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
376002
375929
-
Gln
CTG
-
¡û
>C171032537
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
375816
375743
-
Gln
CTG
-
¡û
>C171037216
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
374533
374460
-
Gln
CTG
-
¡û
>C171038901
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
407801
407728
-
Gln
CTG
-
¡û
>C171111807
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
471061
471134
+
Gln
CTG
-
¡û
>C012158
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
381090
381019
-
Gln
CTG
[Ensembl]
¡û
>W141075605
ATAZ01000050
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
17622
17695
+
Gln
CTG
[ENA]
¡û
>W141244923
CAKV01000102
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
27507
27434
-
Gln
CTG
[ENA]
¡û
>W141292099
JAUI01000002
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
10810
10737
-
Gln
CTG
[ENA]
¡û
>W141292177
JAUJ01000019
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
1685
1612
-
Gln
CTG
[ENA]
¡û
>WENV183511488
OMJG01000450
[OMJG] food metagenome; Cotija cheese
16891
16964
+
Gln
CTG
[ENA]
¢þ
>W141402099
JDVA01000002
Bacillota
Leuconostoc pseudomesenteroides PS12 [JDVA]
12565
12492
-
Gln
CTG
[ENA]
¡û
>C181003773
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
621799
621726
-
Gln
CTG
-
¡û
>C181003837
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
611372
611299
-
Gln
CTG
-
¡û
>C181054941
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
375516
375443
-
Gln
CTG
-
¡û
>C191019035
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
764755
764828
+
Gln
CTG
-
¡û
>C191135425
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
375516
375443
-
Gln
CTG
-
¡û
>C191137980
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
375517
375444
-
Gln
CTG
-
¡û
>C191146263
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
375512
375439
-
Gln
CTG
-
¡û
>C191155329
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1548649
1548722
+
Gln
CTG
-
¡û
>W09100501
AABH02000038
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
7233
7306
+
Gln
CTG
[ENA]
¡û
>W09127270
ACKV01000084
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
18719
18792
+
Gln
CTG
[ENA]
¡û
>W1910181174
BJLS01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
183723
183650
-
Gln
CTG
[ENA]
¡û
>C141000467
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
375603
375530
-
Gln
CTG
[Ensembl]
¡û
>W1910810843
MUXD01000055
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
1285
1212
-
Gln
CTG
[ENA]
¡û
>W1910870968
NCWT01000005
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
20004
20077
+
Gln
CTG
[ENA]
¡û
>W1911533337
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
1126297
1126370
+
Gln
CTG
[ENA]
¡û
>W1911533488
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
1251025
1251098
+
Gln
CTG
[ENA]
¡û
>W1911533591
OKQW01000001
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
621344
621417
+
Gln
CTG
[ENA]
¡û
>W1911533948
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
227743
227670
-
Gln
CTG
[ENA]
¡û
>W1911538479
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
1126165
1126238
+
Gln
CTG
[ENA]
¡û
>W1911539180
OMPP01000001
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
227741
227668
-
Gln
CTG
[ENA]
¡û
>W1911540026
ONZM01000028
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
188597
188524
-
Gln
CTG
[ENA]
¡û
>W1911541761
OOIO01000018
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
135044
134971
-
Gln
CTG
[ENA]
¡û
>W1810705439
QMJH01000020
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
17391
17464
+
Gln
CTG
[ENA]
¡û
>W1810705464
QMJI01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
20136
20209
+
Gln
CTG
[ENA]
¡û
>W1810705509
QMJJ01000001
Bacillota
Leuconostoc pseudomesenteroides KMB_610 [QMJJ]
27626
27553
-
Gln
CTG
[ENA]
¡û
>W1810705553
QMJK01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
13455
13382
-
Gln
CTG
[ENA]
¡û
>C151089415
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
1085939
1085866
-
Gln
CTG
[Ensembl]
¡û
>W1510013866
BBPK01000006
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
125311
125384
+
Gln
CTG
[ENA]
¡û
>C10108498
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1478989
1478916
-
Gln
CTG
[Ensembl]
¡û
>WENV11100273
AEKF01000006
Food metagenome, Jonggazip commercial cabbage kimchi
95911
95838
-
Gln
CTG
[ENA]
¡û
>C11112613
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
946118
946191
+
Gln
CTG
[Ensembl]
¡û
>W1511346266
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
234731
234658
-
Gln
CTG
[ENA]
¡û
>W11141982
AEOQ01000031
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
26798
26725
-
Gln
CTG
[ENA]
¡û
>W11142019
AEOQ01000948
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
1801
1728
-
Gln
CTG
[ENA]
¡û
>W1511585368
LAYN01000001
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
17475
17548
+
Gln
CTG
[ENA]
¡û
>W1511585717
LAYU01000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
145107
145034
-
Gln
CTG
[ENA]
¡û
>W1511585738
LAYV01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
223443
223516
+
Gln
CTG
[ENA]
¡û
>C121005825
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
375762
375689
-
Gln
CTG
[Ensembl]
¡û
>C161074423
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
375630
375557
-
Gln
CTG
-
¡û
>W1610061377
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
108914
108841
-
Gln
CTG
[ENA]
¡û
>W1610061437
BCMP01000021
Bacillota
Leuconostoc mesenteroides [BCMP]
107403
107330
-
Gln
CTG
[ENA]
¡û
>C131008331
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
367002
366929
-
Gln
CTG
[Ensembl]
¡û
>W1610747275
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
226280
226207
-
Gln
CTG
[ENA]
¡û
>W1710059042
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
108914
108841
-
Gln
CTG
[ENA]
¡û
>W1710059102
BCMP01000021
Bacillota
Leuconostoc mesenteroides [BCMP]
107403
107330
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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