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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399132 (82 seq.)
>W1711086604
LSXJ01000016
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSXJ]
15729
15803
+
Gly
TCC
[ENA]
¡û
>W1711086681
LSXK01000043
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSXK]
101239
101165
-
Gly
TCC
[ENA]
¡û
>W1711090415
LTAR01000060
Actinomycetota
Corynebacterium diphtheriae bv. belfanti [LTAR]
16616
16690
+
Gly
TCC
[ENA]
¡û
>W1711092528
LTEE01000042
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
25882
25808
-
Gly
TCC
[ENA]
¡û
>W1711093845
LTFJ01000012
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
12804
12878
+
Gly
TCC
[ENA]
¡û
>W1711095140
LTGN01000043
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
173
99
-
Gly
TCC
[ENA]
¡û
>W1711096269
LTHP01000080
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
5251
5177
-
Gly
TCC
[ENA]
¡û
>W1711096336
LTHQ01000043
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
12865
12939
+
Gly
TCC
[ENA]
¡û
>W1711096994
LTIG01000042
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
200
126
-
Gly
TCC
[ENA]
¡û
>W1711097561
LTIU01000036
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
17135
17061
-
Gly
TCC
[ENA]
¡û
>W1711098013
LTJF01000007
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
137879
137953
+
Gly
TCC
[ENA]
¡û
>W1711098584
LTJR01000032
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
71701
71627
-
Gly
TCC
[ENA]
¡û
>W1711099050
LTKD01000024
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
22560
22486
-
Gly
TCC
[ENA]
¡û
>W1711099327
LTKK01000005
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
31317
31391
+
Gly
TCC
[ENA]
¡û
>W1711102296
LTNP01000035
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
174
100
-
Gly
TCC
[ENA]
¡û
>W1711102308
LTNQ01000010
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
79375
79449
+
Gly
TCC
[ENA]
¡û
>W1711102383
LTNR01000056
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
91046
91120
+
Gly
TCC
[ENA]
¡û
>W1711102412
LTNS01000009
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
78934
79008
+
Gly
TCC
[ENA]
¡û
>W1711102502
LTNT01000048
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
23505
23431
-
Gly
TCC
[ENA]
¡û
>W1711102513
LTNU01000017
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
78671
78745
+
Gly
TCC
[ENA]
¡û
>W1711102563
LTNV01000018
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
23858
23784
-
Gly
TCC
[ENA]
¡û
>W1711103295
LTOO01000032
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
15090
15164
+
Gly
TCC
[ENA]
¡û
>W1711103427
LTOS01000009
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
132178
132252
+
Gly
TCC
[ENA]
¡û
>W1711106678
LTSB01000062
Actinomycetota
Corynebacterium sp. HMSC034B08 [LTSB]
5046
5120
+
Gly
TCC
[ENA]
¡û
>W1711106990
LTSJ01000011
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
126241
126167
-
Gly
TCC
[ENA]
¡û
>W1711109448
LTUR01000025
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
6387
6313
-
Gly
TCC
[ENA]
¡û
>W1711110078
LTVE01000051
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
100074
100148
+
Gly
TCC
[ENA]
¡û
>W1711112810
LTXS01000037
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
7458
7384
-
Gly
TCC
[ENA]
¡û
>W1711113437
LTYH01000020
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
12884
12958
+
Gly
TCC
[ENA]
¡û
>W1711114775
LTZP01000011
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
4861
4935
+
Gly
TCC
[ENA]
¡û
>W1711114837
LTZQ01000016
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
128725
128799
+
Gly
TCC
[ENA]
¡û
>W1711114959
LTZS01000057
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
168
94
-
Gly
TCC
[ENA]
¡û
>W1711186830
LWON01000030
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
78985
79059
+
Gly
TCC
[ENA]
¡û
>W1711187898
LWPW01000081
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
5905
5979
+
Gly
TCC
[ENA]
¡û
>W1711377295
MDYV01000011
Actinomycetota
Corynebacterium diphtheriae [MDYV]
45476
45550
+
Gly
TCC
[ENA]
¡û
>W1711427605
MIFV01000013
Actinomycetota
Corynebacterium amycolatum [MIFV]
5036
5110
+
Gly
TCC
[ENA]
¡û
>W1711435560
MIOB01000015
Actinomycetota
Corynebacterium diphtheriae [MIOB]
15479
15553
+
Gly
TCC
[ENA]
¡û
>W1711435974
MIOJ01000014
Actinomycetota
Corynebacterium diphtheriae [MIOJ]
99875
99801
-
Gly
TCC
[ENA]
¡û
>W1711507492
MKXS01000010
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
36232
36158
-
Gly
TCC
[ENA]
¡û
>W1711508318
MKYK01000004
Actinomycetota
Corynebacterium diphtheriae [MKYK]
153737
153663
-
Gly
TCC
[ENA]
¡û
>W1711724023
MTPT01000033
Actinomycetota
Corynebacterium amycolatum [MTPT]
14681
14607
-
Gly
TCC
[ENA]
¡û
>W1711946361
NBNL01000002
Actinomycetota
Corynebacterium diphtheriae [NBNL]
275089
275015
-
Gly
TCC
[ENA]
¡û
>W1711979899
NDHK01000013
Actinomycetota
Corynebacterium diphtheriae [NDHK]
38766
38692
-
Gly
TCC
[ENA]
¡û
>W1711980162
NDHP01000013
Actinomycetota
Corynebacterium diphtheriae [NDHP]
38742
38668
-
Gly
TCC
[ENA]
¡û
>C171117424
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
792460
792534
+
Gly
TCC
-
¡û
>W131000454
AGEM01000010
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
200038
199964
-
Gly
TCC
[ENA]
¡û
>WENV180554206
OCJN01000006
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
471049
471123
+
Gly
TCC
[ENA]
¢þ
>WENV181326323
OFLL01000106
[OFLL] metagenome; faeces
31425
31499
+
Gly
TCC
[ENA]
¢þ
>WENV182641540
OJLI01000318
[OJLI] metagenome; surface
804
732
-
Gly
TCC
[ENA]
¢þ
>WENV182837618
OKGJ01002199
[OKGJ] human gut metagenome; human gut
541
615
+
Gly
TCC
[ENA]
¢þ
>WENV183087821
OLJO01002836
[OLJO] human gut metagenome; human gut
504
430
-
Gly
TCC
[ENA]
¢þ
>WENV170685078
LFRM01071920
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
411
337
-
Gly
TCC
[ENA]
¢þ
>C181056578
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
21426
21352
-
Gly
TCC
-
¡û
>C181143844
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
1981990
1981916
-
Gly
TCC
-
¡û
>C191094586
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
1320716
1320790
+
Gly
TCC
-
¡û
>C191111923
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
790805
790731
-
Gly
TCC
-
¡û
>W09114658
ABZU01000015
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
45665
45739
+
Gly
TCC
[ENA]
¡û
>C141002623
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
2239163
2239089
-
Gly
TCC
[Ensembl]
¡û
>W1911596528
PNHF01000048
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
3554
3480
-
Gly
TCC
[ENA]
¡û
>W1810187592
PKHS01000002
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
441621
441695
+
Gly
TCC
[ENA]
¡û
>W1810187668
PKHT01000009
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
285
211
-
Gly
TCC
[ENA]
¡û
>W1810568933
QEEZ01000003
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
82371
82445
+
Gly
TCC
[ENA]
¡û
>C151013263
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
819031
818957
-
Gly
TCC
-
¡û
>C151039880
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1917973
1917899
-
Gly
TCC
[Ensembl]
¡û
>C151054659
CP009583
Actinomycetota
Corynebacterium ulcerans 210931 [CP009583]
1837112
1837038
-
Gly
TCC
[Ensembl]
¡û
>C151062171
CP009927
Actinomycetota
Corynebacterium pseudotuberculosis VD57 [CP009927]
1755548
1755474
-
Gly
TCC
[Ensembl]
¡û
>C151084508
CP011546
Actinomycetota
Corynebacterium uterequi DSM 45634 [CP011546]
1788348
1788274
-
Gly
TCC
[Ensembl]
¡û
>W1511351381
JRNE01000081
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
2003
2077
+
Gly
TCC
[ENA]
¡û
>W1511442779
JUSD01000042
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
68892
68818
-
Gly
TCC
[ENA]
¡û
>W1511457817
JVIP01000040
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
31233
31307
+
Gly
TCC
[ENA]
¡û
>W1511461045
JVMD01000005
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
84280
84206
-
Gly
TCC
[ENA]
¡û
>W1511463594
JVOW01000011
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
25368
25294
-
Gly
TCC
[ENA]
¡û
>W1511464328
JVPT01000074
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
31987
32061
+
Gly
TCC
[ENA]
¡û
>W1511469477
JVVM01000026
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
142672
142746
+
Gly
TCC
[ENA]
¡û
>W1511476440
JWEP01000068
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
121076
121150
+
Gly
TCC
[ENA]
¡û
>W1511585635
LAYS01000038
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
23704
23778
+
Gly
TCC
[ENA]
¡û
>C161046222
CP012837
Actinomycetota
Corynebacterium pseudotuberculosis 1002B [CP012837]
1096497
1096571
+
Gly
TCC
-
¡û
>C161054356
CP013260
Actinomycetota
Corynebacterium pseudotuberculosis MB11 [CP013260]
1871280
1871206
-
Gly
TCC
-
¡û
>W1610068191
BCRD01000002
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
282799
282725
-
Gly
TCC
[ENA]
¡û
>W1610617090
LGSX01000027
Actinomycetota
Corynebacterium ulcerans [LGSX]
160151
160077
-
Gly
TCC
[ENA]
¡û
>W1710065564
BCRD01000002
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
282799
282725
-
Gly
TCC
[ENA]
¡û
>W1710742704
LGSX01000027
Actinomycetota
Corynebacterium ulcerans [LGSX]
160151
160077
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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