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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399205 (24 seq.)
>W1710891800
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
194198
194272
+
Met
CAT
[ENA]
¡û
>W1710891806
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
91969
91895
-
Met
CAT
[ENA]
¡û
>W1710927092
LOEZ01000040
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
57239
57313
+
Met
CAT
[ENA]
¡û
>W1711342455
MCHF01000034
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
21972
21898
-
Met
CAT
[ENA]
¡û
>W131162528
AQYY01000005
Bacillota
Dehalobacter sp. FTH1 [AQYY]
173611
173685
+
Met
CAT
[ENA]
¡û
>W141088304
AUUR01000130
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
6968
6894
-
Met
CAT
[ENA]
¡û
>W141246557
CANE01000011
Bacillota
Dehalobacter restrictus E1 [CANE]
64272
64198
-
Met
CAT
[ENA]
¡û
>W141246683
CANF01002343
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
64272
64198
-
Met
CAT
[ENA]
¡û
>WENV182883877
OKSB01054624
[OKSB] human gut metagenome; faeces
360
434
+
Ile2
CAT
[ENA]
¢þ
>WENV183253358
OLRI01060541
[OLRI] human gut metagenome; faeces
212
286
+
Ile2
CAT
[ENA]
¢þ
>WENV183331342
OLWB01111117
[OLWB] human gut metagenome; faeces
202
276
+
Ile2
CAT
[ENA]
¢þ
>WENV170659037
JXWO01000121
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
20587
20661
+
Met
CAT
[ENA]
¢þ
>WENV170967193
MTKW01000487
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
8444
8518
+
Met
CAT
[ENA]
¢þ
>C141011735
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
634014
634088
+
Met
CAT
[Ensembl]
¡û
>W1910647173
LXPC01000013
Bacillota
Dehalobacter sp. MCB1 [LXPC]
90696
90770
+
Met
CAT
[ENA]
¡û
>W1911608677
PNXX01000001
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
607416
607342
-
Met
CAT
[ENA]
¡û
>W1911613551
POSF01000011
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
263160
263086
-
Met
CAT
[ENA]
¡û
>C151074843
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
2210060
2210134
+
Met
CAT
[Ensembl]
¡û
>C11120641
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2443047
2442973
-
Met
CAT
[Ensembl]
¡û
>C131008528
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2568258
2568184
-
Met
CAT
[Ensembl]
¡û
>C131008579
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2595875
2595801
-
Met
CAT
[Ensembl]
¡û
>W1610752165
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
194198
194272
+
Met
CAT
[ENA]
¡û
>W1610752171
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
91969
91895
-
Met
CAT
[ENA]
¡û
>W1610784634
LOEZ01000040
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
57239
57313
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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