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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399269 (40 seq.)
>W1711294021
LZZB01000118
Bacillota
Clostridium beijerinckii [LZZB]
2202
2128
-
Glu
CTC
[ENA]
¡û
>W1711294079
LZZC01000044
Bacillota
Clostridium beijerinckii [LZZC]
33581
33655
+
Glu
CTC
[ENA]
¡û
>W1711294140
LZZD01000067
Bacillota
Clostridium beijerinckii [LZZD]
15083
15009
-
Glu
CTC
[ENA]
¡û
>W1711294186
LZZE01000097
Bacillota
Clostridium beijerinckii [LZZE]
13133
13207
+
Glu
CTC
[ENA]
¡û
>W1711294214
LZZF01000030
Bacillota
Clostridium beijerinckii [LZZF]
2442
2368
-
Glu
CTC
[ENA]
¡û
>W1711294246
LZZG01000046
Bacillota
Clostridium beijerinckii [LZZG]
16211
16285
+
Glu
CTC
[ENA]
¡û
>W1711294293
LZZH01000077
Bacillota
Clostridium beijerinckii [LZZH]
16114
16188
+
Glu
CTC
[ENA]
¡û
>W1711294324
LZZI01000068
Bacillota
Clostridium beijerinckii [LZZI]
10232
10158
-
Glu
CTC
[ENA]
¡û
>W1711294403
LZZJ01000272
Bacillota
Clostridium beijerinckii [LZZJ]
6399
6325
-
Glu
CTC
[ENA]
¡û
>W1711294423
LZZK01000018
Bacillota
Clostridium beijerinckii [LZZK]
40023
40097
+
Glu
CTC
[ENA]
¡û
>W1711294555
LZZM01000182
Bacillota
Clostridium puniceum [LZZM]
46173
46247
+
Glu
CTC
[ENA]
¡û
>W1711320431
MBAF01000015
Bacillota
Clostridium beijerinckii [MBAF]
72347
72273
-
Glu
CTC
[ENA]
¡û
>W131156894
AQQG01000140
Bacillota
Clostridium diolis DSM 15410 [AQQG]
5120
5046
-
Glu
CTC
[ENA]
¡û
>W1711794343
MWMH01000003
Bacillota
Clostridium beijerinckii [MWMH]
667802
667876
+
Glu
CTC
[ENA]
¡û
>W1712096551
NHZR01000005
Bacillota
Clostridium diolis [NHZR]
703392
703466
+
Glu
CTC
[ENA]
¡û
>C171045870
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
2709179
2709105
-
Glu
CTC
-
¡û
>C005123
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
2672676
2672602
-
Glu
CTC
[Ensembl]
¡û
>w011458
AALO01000006
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
167488
167417
-
Glu
CTC
[ENA]
¡û
>WENV180232191
OBCO01000174
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
34846
34772
-
Glu
CTC
[ENA]
¢þ
>WENV180233261
OBCP01000268
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
34846
34772
-
Glu
CTC
[ENA]
¢þ
>WENV180346389
OBLN01083576
[OBLN] sediment metagenome; sediment
89
15
-
Glu
CTC
[ENA]
¢þ
>WENV180569872
OCLR01000620
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
7507
7433
-
Glu
CTC
[ENA]
¢þ
>WENV180570678
OCLS01000387
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
11822
11748
-
Glu
CTC
[ENA]
¢þ
>WENV180571361
OCLT01000061
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
25593
25519
-
Glu
CTC
[ENA]
¢þ
>WENV180573777
OCLW01000165
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
34845
34771
-
Glu
CTC
[ENA]
¢þ
>WENV180639710
OCRL01000080
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
179260
179334
+
Glu
CTC
[ENA]
¢þ
>WENV180640884
OCRM01000272
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
34845
34771
-
Glu
CTC
[ENA]
¢þ
>W141083121
AUPH01001100
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
55
129
+
Glu
CTC
[ENA]
¡û
>W141200317
AYXR01000081
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
12030
12104
+
Glu
CTC
[ENA]
¡û
>WENV170700144
LIDZ01003784
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
78483
78409
-
Glu
CTC
[ENA]
¢þ
>C181203688
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
2757901
2757827
-
Glu
CTC
-
¡û
>W141560258
JHXK01000025
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
7153
7079
-
Glu
CTC
[ENA]
¡û
>W1810147472
PIQP01000008
Bacillota
Clostridium beijerinckii WB [PIQP]
82285
82359
+
Glu
CTC
[ENA]
¡û
>W1810250503
PQCR01000069
Bacillota
Clostridium sp. 2-1 [PQCR]
16912
16986
+
Glu
CTC
[ENA]
¡û
>W1810271452
PRKY01000003
Bacillota
Clostridium diolis WST [PRKY]
232970
233044
+
Glu
CTC
[ENA]
¡û
>C151012406
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
2672671
2672597
-
Glu
CTC
[Ensembl]
¡û
>C151088308
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
3566433
3566507
+
Glu
CTC
-
¡û
>C161023486
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
3557617
3557691
+
Glu
CTC
[Ensembl]
¡û
>W121102351
AKWA01000051
Bacillota
Clostridium beijerinckii G117 [AKWA]
82285
82359
+
Glu
CTC
[ENA]
¡û
>W1611062454
MBAF01000015
Bacillota
Clostridium beijerinckii [MBAF]
72347
72273
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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