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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399274 (71 seq.)
>W1711294036
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
36411
36485
+
Gln
TTG
[ENA]
¡û
>W1711294042
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
36986
37060
+
Gln
TTG
[ENA]
¡û
>W1711294192
LZZE01000106
Bacillota
Clostridium beijerinckii [LZZE]
447
521
+
Gln
TTG
[ENA]
¡û
>W1711294224
LZZG01000008
Bacillota
Clostridium beijerinckii [LZZG]
251
325
+
Gln
TTG
[ENA]
¡û
>W1711294277
LZZG01000146
Bacillota
Clostridium beijerinckii [LZZG]
419
345
-
Gln
TTG
[ENA]
¡û
>W1711294332
LZZI01000101
Bacillota
Clostridium beijerinckii [LZZI]
17193
17119
-
Gln
TTG
[ENA]
¡û
>W1711294364
LZZJ01000041
Bacillota
Clostridium beijerinckii [LZZJ]
87419
87345
-
Gln
TTG
[ENA]
¡û
>W1711294379
LZZJ01000125
Bacillota
Clostridium beijerinckii [LZZJ]
4096
4022
-
Gln
TTG
[ENA]
¡û
>W1711294385
LZZJ01000125
Bacillota
Clostridium beijerinckii [LZZJ]
3520
3446
-
Gln
TTG
[ENA]
¡û
>W1711294444
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
5636
5562
-
Gln
TTG
[ENA]
¡û
>W1711294450
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
5060
4986
-
Gln
TTG
[ENA]
¡û
>W1711294531
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
2668
2742
+
Gln
TTG
[ENA]
¡û
>W1711294537
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
3262
3336
+
Gln
TTG
[ENA]
¡û
>W1711320478
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
22853
22927
+
Gln
TTG
[ENA]
¡û
>W1711320485
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23486
23560
+
Gln
TTG
[ENA]
¡û
>W131092153
AOIF01000148
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
15745
15671
-
Gln
TTG
[ENA]
¡û
>W131156874
AQQG01000090
Bacillota
Clostridium diolis DSM 15410 [AQQG]
12115
12041
-
Gln
TTG
[ENA]
¡û
>W131156880
AQQG01000090
Bacillota
Clostridium diolis DSM 15410 [AQQG]
11540
11466
-
Gln
TTG
[ENA]
¡û
>W1711902867
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
10328
10254
-
Gln
TTG
[ENA]
¡û
>W1711902873
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
9747
9673
-
Gln
TTG
[ENA]
¡û
>W1712096600
NHZR01000026
Bacillota
Clostridium diolis [NHZR]
42469
42543
+
Gln
TTG
[ENA]
¡û
>W1712096606
NHZR01000026
Bacillota
Clostridium diolis [NHZR]
43046
43120
+
Gln
TTG
[ENA]
¡û
>C171045667
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
508582
508656
+
Gln
TTG
-
¡û
>C171045826
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
392342
392416
+
Gln
TTG
-
¡û
>C005065
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
432243
432317
+
Gln
TTG
[Ensembl]
¡û
>C005071
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
432818
432892
+
Gln
TTG
[Ensembl]
¡û
>w011535
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
14031
13955
-
Gln
TTG
[ENA]
¡û
>w011529
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
14606
14530
-
Gln
TTG
[ENA]
¡û
>WENV180232119
OBCO01000122
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
134923
134849
-
Gln
TTG
[ENA]
¢þ
>WENV180232307
OBCO01000296
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
41102
41176
+
Gln
TTG
[ENA]
¢þ
>WENV180232515
OBCO01000704
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180233140
OBCP01000146
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
134923
134849
-
Gln
TTG
[ENA]
¢þ
>WENV180233451
OBCP01000570
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
193
267
+
Gln
TTG
[ENA]
¢þ
>WENV180233494
OBCP01000682
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180311581
OBJT01390038
[OBJT] soil metagenome; soil
179
105
-
Gln
TTG
[ENA]
¢þ
>WENV180569499
OCLR01000111
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
28885
28959
+
Gln
TTG
[ENA]
¢þ
>WENV180569897
OCLR01000725
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
4
78
+
Gln
TTG
[ENA]
¢þ
>WENV180569918
OCLR01000889
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180570434
OCLS01000111
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
28885
28959
+
Gln
TTG
[ENA]
¢þ
>WENV180570871
OCLS01000895
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180571060
OCLS01002822
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
162
88
-
Gln
TTG
[ENA]
¢þ
>WENV180571472
OCLT01000124
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
134923
134849
-
Gln
TTG
[ENA]
¢þ
>WENV180571837
OCLT01000651
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180571901
OCLT01000886
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
252
326
+
Gln
TTG
[ENA]
¢þ
>WENV180573715
OCLW01000124
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
134923
134849
-
Gln
TTG
[ENA]
¢þ
>WENV180574118
OCLW01000703
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180574209
OCLW01002116
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
4
78
+
Gln
TTG
[ENA]
¢þ
>WENV180639766
OCRL01000122
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
134923
134849
-
Gln
TTG
[ENA]
¢þ
>WENV180640129
OCRL01000644
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180640193
OCRL01000905
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
252
326
+
Gln
TTG
[ENA]
¢þ
>WENV180640702
OCRM01000118
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
134923
134849
-
Gln
TTG
[ENA]
¢þ
>WENV180641095
OCRM01000686
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
5687
5761
+
Gln
TTG
[ENA]
¢þ
>WENV180641229
OCRM01001097
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
4
78
+
Gln
TTG
[ENA]
¢þ
>W141200288
AYXR01000039
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
12213
12139
-
Gln
TTG
[ENA]
¡û
>W141200294
AYXR01000039
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
11638
11564
-
Gln
TTG
[ENA]
¡û
>C181203630
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
446743
446817
+
Gln
TTG
-
¡û
>C181203636
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
447319
447393
+
Gln
TTG
-
¡û
>W1911766207
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
235401
235475
+
Gln
TTG
[ENA]
¡û
>W1911766213
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
235981
236055
+
Gln
TTG
[ENA]
¡û
>W1810271487
PRKY01000045
Bacillota
Clostridium diolis WST [PRKY]
39832
39758
-
Gln
TTG
[ENA]
¡û
>C151012348
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
432243
432317
+
Gln
TTG
[Ensembl]
¡û
>C151012354
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
432818
432892
+
Gln
TTG
[Ensembl]
¡û
>C151088344
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5799672
5799598
-
Gln
TTG
-
¡û
>C151088350
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5799097
5799023
-
Gln
TTG
-
¡û
>C161023453
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
403840
403914
+
Gln
TTG
[Ensembl]
¡û
>C161023459
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
404418
404492
+
Gln
TTG
[Ensembl]
¡û
>C131012918
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
544426
544500
+
Gln
TTG
[Ensembl]
¡û
>C131012924
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
545017
545091
+
Gln
TTG
[Ensembl]
¡û
>W1611062501
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
22853
22927
+
Gln
TTG
[ENA]
¡û
>W1611062508
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23486
23560
+
Gln
TTG
[ENA]
¡û
>W1710588061
FQZB01000010
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
145087
145013
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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