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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399275 (73 seq.)
>W1711293879
LZYZ01000004
Bacillota
Clostridium saccharobutylicum [LZYZ]
482060
481986
-
Gly
GCC
[ENA]
¡û
>W1711293885
LZYZ01000004
Bacillota
Clostridium saccharobutylicum [LZYZ]
481449
481375
-
Gly
GCC
[ENA]
¡û
>W1711293956
LZZA01000043
Bacillota
Clostridium saccharobutylicum [LZZA]
4414
4488
+
Gly
GCC
[ENA]
¡û
>W1711293962
LZZA01000043
Bacillota
Clostridium saccharobutylicum [LZZA]
5023
5097
+
Gly
GCC
[ENA]
¡û
>W1711294039
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
36676
36750
+
Gly
GCC
[ENA]
¡û
>W1711294045
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
37253
37327
+
Gly
GCC
[ENA]
¡û
>W1711294189
LZZE01000106
Bacillota
Clostridium beijerinckii [LZZE]
137
211
+
Gly
GCC
[ENA]
¡û
>W1711294195
LZZE01000106
Bacillota
Clostridium beijerinckii [LZZE]
712
786
+
Gly
GCC
[ENA]
¡û
>W1711294258
LZZG01000087
Bacillota
Clostridium beijerinckii [LZZG]
13016
12942
-
Gly
GCC
[ENA]
¡û
>W1711294280
LZZG01000146
Bacillota
Clostridium beijerinckii [LZZG]
152
78
-
Gly
GCC
[ENA]
¡û
>W1711294335
LZZI01000101
Bacillota
Clostridium beijerinckii [LZZI]
16937
16863
-
Gly
GCC
[ENA]
¡û
>W1711294382
LZZJ01000125
Bacillota
Clostridium beijerinckii [LZZJ]
3831
3757
-
Gly
GCC
[ENA]
¡û
>W1711294388
LZZJ01000125
Bacillota
Clostridium beijerinckii [LZZJ]
3263
3189
-
Gly
GCC
[ENA]
¡û
>W1711294447
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
5371
5297
-
Gly
GCC
[ENA]
¡û
>W1711294453
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
4803
4729
-
Gly
GCC
[ENA]
¡û
>W1711294534
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
2920
2994
+
Gly
GCC
[ENA]
¡û
>W1711294540
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
3517
3591
+
Gly
GCC
[ENA]
¡û
>W1711320481
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23118
23192
+
Gly
GCC
[ENA]
¡û
>W1711320490
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
24113
24187
+
Gly
GCC
[ENA]
¡û
>W1711902870
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
10069
9995
-
Gly
GCC
[ENA]
¡û
>W1711902876
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
9486
9412
-
Gly
GCC
[ENA]
¡û
>W1712096603
NHZR01000026
Bacillota
Clostridium diolis [NHZR]
42735
42809
+
Gly
GCC
[ENA]
¡û
>C171045589
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
426115
426189
+
Gly
GCC
-
¡û
>C171045670
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
508841
508915
+
Gly
GCC
-
¡û
>C171045740
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
426117
426191
+
Gly
GCC
-
¡û
>C171045746
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
426726
426800
+
Gly
GCC
-
¡û
>C171045829
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
392607
392681
+
Gly
GCC
-
¡û
>C171045909
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
440196
440270
+
Gly
GCC
-
¡û
>C171045915
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
440805
440879
+
Gly
GCC
-
¡û
>C171045994
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
426117
426191
+
Gly
GCC
-
¡û
>C171046000
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
426726
426800
+
Gly
GCC
-
¡û
>W131092156
AOIF01000148
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
15486
15412
-
Gly
GCC
[ENA]
¡û
>W131156865
AQQG01000087
Bacillota
Clostridium diolis DSM 15410 [AQQG]
171
97
-
Gly
GCC
[ENA]
¡û
>W131156877
AQQG01000090
Bacillota
Clostridium diolis DSM 15410 [AQQG]
11850
11776
-
Gly
GCC
[ENA]
¡û
>W131156883
AQQG01000090
Bacillota
Clostridium diolis DSM 15410 [AQQG]
11273
11199
-
Gly
GCC
[ENA]
¡û
>C005068
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
432508
432582
+
Gly
GCC
[Ensembl]
¡û
>C005074
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
433085
433159
+
Gly
GCC
[Ensembl]
¡û
>w011538
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
13764
13688
-
Gly
GCC
[ENA]
¡û
>w011532
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
14341
14265
-
Gly
GCC
[ENA]
¡û
>WENV180232310
OBCO01000296
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
41367
41441
+
Gly
GCC
[ENA]
¢þ
>WENV180233454
OBCP01000570
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
458
532
+
Gly
GCC
[ENA]
¢þ
>W141039548
ALXI01000153
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
106
180
+
Gly
GCC
[ENA]
¡û
>WENV180569900
OCLR01000725
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
269
343
+
Gly
GCC
[ENA]
¢þ
>WENV180570845
OCLS01000737
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
161
235
+
Gly
GCC
[ENA]
¢þ
>WENV180571904
OCLT01000886
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
519
593
+
Gly
GCC
[ENA]
¢þ
>WENV180574212
OCLW01002116
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
269
343
+
Gly
GCC
[ENA]
¢þ
>WENV180640196
OCRL01000905
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
519
593
+
Gly
GCC
[ENA]
¢þ
>WENV180641232
OCRM01001097
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
269
343
+
Gly
GCC
[ENA]
¢þ
>W141083139
AUPH01001976
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
502
428
-
Gly
GCC
[ENA]
¡û
>W141083155
AUPH01003169
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
348
274
-
Gly
GCC
[ENA]
¡û
>W141200291
AYXR01000039
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
11948
11874
-
Gly
GCC
[ENA]
¡û
>W141200297
AYXR01000039
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
11371
11297
-
Gly
GCC
[ENA]
¡û
>C181176734
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1394552
1394626
+
Gly
GCC
-
¡û
>C181203633
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
447008
447082
+
Gly
GCC
-
¡û
>C181203639
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
447576
447650
+
Gly
GCC
-
¡û
>C141007601
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
426118
426192
+
Gly
GCC
[Ensembl]
¡û
>C141007607
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
426727
426801
+
Gly
GCC
[Ensembl]
¡û
>W1911766210
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
235660
235734
+
Gly
GCC
[ENA]
¡û
>W1911766216
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
236242
236316
+
Gly
GCC
[ENA]
¡û
>W1810250489
PQCR01000028
Bacillota
Clostridium sp. 2-1 [PQCR]
61647
61573
-
Gly
GCC
[ENA]
¡û
>W1810271499
PRKY01000107
Bacillota
Clostridium diolis WST [PRKY]
6176
6102
-
Gly
GCC
[ENA]
¡û
>C151012351
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
432508
432582
+
Gly
GCC
[Ensembl]
¡û
>C151012357
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
433085
433159
+
Gly
GCC
[Ensembl]
¡û
>C151088347
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5799407
5799333
-
Gly
GCC
-
¡û
>C151088353
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5798830
5798756
-
Gly
GCC
-
¡û
>W11176289
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
716785
716859
+
Gly
GCC
[ENA]
¡û
>W11176295
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
717384
717458
+
Gly
GCC
[ENA]
¡û
>C161023456
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
404106
404180
+
Gly
GCC
[Ensembl]
¡û
>C161023462
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
404684
404758
+
Gly
GCC
[Ensembl]
¡û
>C131012921
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
544685
544759
+
Gly
GCC
[Ensembl]
¡û
>C131012927
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
545276
545350
+
Gly
GCC
[Ensembl]
¡û
>W1611062504
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23118
23192
+
Gly
GCC
[ENA]
¡û
>W1611062513
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
24113
24187
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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