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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399295 (34 seq.)
>W1711170196
LWAF01000004
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
104301
104375
+
Val
TAC
[ENA]
¡û
>w019738
AAUK01000011
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
13242
13318
+
Val
TAC
[ENA]
¡û
>WENV180013923
FPIC01010748
[FPIC] soil metagenome; Soil
3680
3606
-
Val
TAC
[ENA]
¢þ
>WENV180014395
FQKF010003218
[FQKF] soil metagenome; Soil
166
92
-
Val
TAC
[ENA]
¢þ
>WENV181226252
OFDK01000388
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2829
2903
+
Val
TAC
[ENA]
¢þ
>WENV181285313
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
129915
129989
+
Val
TAC
[ENA]
¢þ
>C08004998
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1137089
1137018
-
Val
TAC
[Ensembl]
¡û
>C08011019
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
841481
841410
-
Val
TAC
[Ensembl]
¡û
>WENV170675735
LDZQ01000398
[LDZQ] terrestrial metagenome; oil reservoir sample I2
16422
16496
+
Val
TAC
[ENA]
¢þ
>WENV170676077
LDZR01000805
[LDZR] terrestrial metagenome; oil reservoir sample K2
1096
1170
+
Val
TAC
[ENA]
¢þ
>WENV170676462
LDZR01002707
[LDZR] terrestrial metagenome; oil reservoir sample K2
388
314
-
Val
TAC
[ENA]
¢þ
>W141561630
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
293904
293978
+
Val
TAC
[ENA]
¡û
>W141778867
JONI01000006
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
64696
64622
-
Val
TAC
[ENA]
¡û
>C141000355
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
836131
836057
-
Val
TAC
-
¡û
>C141000365
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
739781
739855
+
Val
TAC
-
¡û
>W1910573547
JPMG01000012
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
18737
18663
-
Val
TAC
[ENA]
¡û
>W1910573584
JPMH01000052
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
5799
5873
+
Val
TAC
[ENA]
¡û
>C151001664
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
914675
914601
-
Val
TAC
-
¡û
>C151001702
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
1602608
1602534
-
Val
TAC
-
¡û
>W1511355431
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1575052
1575126
+
Val
TAC
[ENA]
¡û
>C11123131
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
406584
406658
+
Val
TAC
[Ensembl]
¡û
>C121009888
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1297706
1297780
+
Val
TAC
[Ensembl]
¡û
>C161005085
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
1534013
1534087
+
Val
TAC
[Ensembl]
¡û
>C161034979
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1924196
1924270
+
Val
TAC
[Ensembl]
¡û
>C161071275
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1327184
1327258
+
Val
TAC
[Ensembl]
¡û
>W121010829
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
308379
308305
-
Val
TAC
[ENA]
¡û
>W1610612537
LGEV01000031
Thermotogota
Thermotoga sp. 50_64 [LGEV]
16422
16496
+
Val
TAC
[ENA]
¡û
>W1610612897
LGFF01000184
Thermotogota
Pseudothermotoga lettingae [LGFF]
1096
1170
+
Val
TAC
[ENA]
¡û
>W1610612967
LGFH01000031
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
388
314
-
Val
TAC
[ENA]
¡û
>W1710517597
FNDL01000016
Thermotogota
Fervidobacterium changbaicum [FNDL]
12435
12361
-
Val
TAC
[ENA]
¡û
>W1710593345
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
159800
159874
+
Val
TAC
[ENA]
¡û
>W1710733935
LGEV01000031
Thermotogota
Thermotoga sp. 50_64 [LGEV]
16422
16496
+
Val
TAC
[ENA]
¡û
>W1710734179
LGFF01000184
Thermotogota
Pseudothermotoga lettingae [LGFF]
1096
1170
+
Val
TAC
[ENA]
¡û
>W1710734249
LGFH01000031
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
388
314
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK