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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399347 (30 seq.)
>W1710893465
LNEU01000017
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
19073
19147
+
Val
CAC
[ENA]
¡û
>C171130527
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1257453
1257379
-
Val
CAC
-
¡û
>C010375
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
2302656
2302582
-
Val
CAC
[Ensembl]
¡û
>C011114
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1377241
1377315
+
Val
CAC
[Ensembl]
¡û
>WENV180022325
FTFY01000864
[FTFY] metagenome; soil
47
121
+
Val
CAC
[ENA]
¢þ
>WENV180026499
FTIU01000210
[FTIU] metagenome; soil
4343
4417
+
Val
CAC
[ENA]
¢þ
>WENV180029666
FTJL01000021
[FTJL] metagenome; soil
1470
1544
+
Val
CAC
[ENA]
¢þ
>WENV180033841
FTKL01472967
[FTKL] metagenome; soil
542
616
+
Val
CAC
[ENA]
¢þ
>WENV180344887
OBLL01313783
[OBLL] soil metagenome; soil
137
211
+
Val
CAC
[ENA]
¢þ
>WENV183733377
PJTY01001427
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7865
7939
+
Val
CAC
[ENA]
¢þ
>WENV183739083
PJUE01001502
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
972
898
-
Val
CAC
[ENA]
¢þ
>WENV183744244
PJUK01002911
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1507
1581
+
Val
CAC
[ENA]
¢þ
>WENV170559331
CXWL01119641
[CXWL] groundwater metagenome; biofilm material
30118
30044
-
Val
CAC
[ENA]
¢þ
>WENV170639325
JFJP01001899
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
21069
21143
+
Val
CAC
[ENA]
¢þ
>WENV170708901
LNFM01000021
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
262594
262668
+
Val
CAC
[ENA]
¢þ
>W1911572404
PDBX01000002
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
325663
325589
-
Val
CAC
[ENA]
¡û
>W1911647614
QAJP01000008
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
340245
340171
-
Val
CAC
[ENA]
¡û
>W1810297205
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
1210882
1210956
+
Val
CAC
[ENA]
¡û
>C151062620
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
3511754
3511680
-
Val
CAC
[Ensembl]
¡û
>C11105062
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
1900477
1900551
+
Val
CAC
[Ensembl]
¡û
>C161053583
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
2180715
2180789
+
Val
CAC
[Ensembl]
¡û
>C161053661
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
2848539
2848465
-
Val
CAC
-
¡û
>C161053683
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
2147591
2147665
+
Val
CAC
[Ensembl]
¡û
>C161053759
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
2836831
2836757
-
Val
CAC
[Ensembl]
¡û
>C161053807
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
3446903
3446829
-
Val
CAC
[Ensembl]
¡û
>W1610753731
LNEU01000017
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
19073
19147
+
Val
CAC
[ENA]
¡û
>W1710530371
FNOR01000012
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
142824
142898
+
Val
CAC
[ENA]
¡û
>W1710556466
FOKF01000050
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
18774
18700
-
Val
CAC
[ENA]
¡û
>W1710557541
FOLC01000020
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
28199
28125
-
Val
CAC
[ENA]
¡û
>W1710564217
FOQI01000006
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
147550
147476
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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