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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399368 (41 seq.)
>W1711743904
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
753299
753373
+
Asn
GTT
[ENA]
¡û
>W1712080664
NHMK01000011
Deinococcota
Deinococcus indicus [NHMK]
179517
179443
-
Asn
GTT
[ENA]
¡û
>W131104605
APCS01000172
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
1953
2027
+
Asn
GTT
[ENA]
¡û
>W131178644
ARLS01000042
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
56414
56488
+
Asn
GTT
[ENA]
¡û
>C007763
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
435427
435353
-
Asn
GTT
[Ensembl]
¡û
>C007943
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2070898
2070972
+
Asn
GTT
[Ensembl]
¡û
>WENV180232136
OBCO01000134
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
148053
147979
-
Asn
GTT
[ENA]
¢þ
>WENV180233115
OBCP01000130
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
148053
147979
-
Asn
GTT
[ENA]
¢þ
>WENV180569803
OCLR01000481
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
2839
2913
+
Asn
GTT
[ENA]
¢þ
>WENV180570752
OCLS01000483
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
30323
30249
-
Asn
GTT
[ENA]
¢þ
>WENV180571482
OCLT01000132
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
148053
147979
-
Asn
GTT
[ENA]
¢þ
>WENV180573735
OCLW01000132
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
148053
147979
-
Asn
GTT
[ENA]
¢þ
>WENV180639792
OCRL01000134
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
148053
147979
-
Asn
GTT
[ENA]
¢þ
>WENV180640724
OCRM01000132
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
148053
147979
-
Asn
GTT
[ENA]
¢þ
>WENV181223533
OFDC01028488
[OFDC] hot springs metagenome; Water
84
10
-
Asn
GTT
[ENA]
¢þ
>W141154800
AXLL01000278
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
1932
2006
+
Asn
GTT
[ENA]
¡û
>W141169928
AXWT01000021
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
8907
8833
-
Asn
GTT
[ENA]
¡û
>C181134297
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2247884
2247958
+
Asn
GTT
-
¡û
>C181185091
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
2866338
2866412
+
Asn
GTT
-
¡û
>C181196486
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
193213
193139
-
Asn
GTT
-
¡û
>W141525692
JHAC01000029
Deinococcota
Deinococcus phoenicis [JHAC]
7876
7802
-
Asn
GTT
[ENA]
¡û
>W141561465
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
148323
148249
-
Asn
GTT
[ENA]
¡û
>W141702057
JMLF01000004
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
148418
148344
-
Asn
GTT
[ENA]
¡û
>W141711970
JMQF01000058
Deinococcota
Deinococcus sp. RL [JMQF]
111980
112054
+
Asn
GTT
[ENA]
¡û
>W09102007
AAHE01000005
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
181594
181668
+
Asn
GTT
[ENA]
¡û
>W141821107
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
1373994
1374068
+
Asn
GTT
[ENA]
¡û
>W1911788291
QYCQ01000265
Deinococcota
Deinococcus sp. RM [QYCQ]
4632
4706
+
Asn
GTT
[ENA]
¡û
>W1810003563
BFAG01000015
Deinococcota
Deinococcus aerius TR0125 [BFAG]
78218
78144
-
Asn
GTT
[ENA]
¡û
>W1810423323
PYSV01000006
Deinococcota
Deinococcus arcticus OD32 [PYSV]
69707
69781
+
Asn
GTT
[ENA]
¡û
>C151081884
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1364821
1364895
+
Asn
GTT
[Ensembl]
¡û
>C10105345
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2070898
2070972
+
Asn
GTT
[Ensembl]
¡û
>C11107231
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1976510
1976584
+
Asn
GTT
[Ensembl]
¡û
>C11107272
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2070898
2070972
+
Asn
GTT
[Ensembl]
¡û
>C121002067
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2723416
2723490
+
Asn
GTT
[Ensembl]
¡û
>C161061596
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
2818094
2818168
+
Asn
GTT
[Ensembl]
¡û
>C161082990
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
653870
653796
-
Asn
GTT
-
¡û
>W1610061606
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
528921
528847
-
Asn
GTT
[ENA]
¡û
>W1610639005
LIYN01000354
Deinococcota
Deinococcus sp. UR1 [LIYN]
4158
4084
-
Asn
GTT
[ENA]
¡û
>W1710059271
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
528921
528847
-
Asn
GTT
[ENA]
¡û
>W1710605317
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
2609236
2609310
+
Asn
GTT
[ENA]
¡û
>W1710774899
LIYN01000354
Deinococcota
Deinococcus sp. UR1 [LIYN]
4158
4084
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK