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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399470 (121 seq.)
>W1710802977
LJYF01000029
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
595557
595483
-
Val
GAC
[ENA]
¡û
>W1710803027
LJYG01000101
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
130718
130644
-
Val
GAC
[ENA]
¡û
>W1710855066
LLXZ01000181
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
65841
65915
+
Val
GAC
[ENA]
¡û
>W1710855157
LLYB01000094
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
127426
127352
-
Val
GAC
[ENA]
¡û
>W1710873348
LMMS01000008
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
22856
22930
+
Val
GAC
[ENA]
¡û
>W1710877749
LMQJ01000023
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
208401
208475
+
Val
GAC
[ENA]
¡û
>W1710878518
LMRA01000004
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
141547
141621
+
Val
GAC
[ENA]
¡û
>W1711067393
LSEF01000041
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
84408
84482
+
Val
GAC
[ENA]
¡û
>W1711072999
LSIC01000124
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
49864
49938
+
Val
GAC
[ENA]
¡û
>W1711124790
LUKO01000154
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
92808
92882
+
Val
GAC
[ENA]
¡û
>W1711129615
LUUB01000080
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
261962
261888
-
Val
GAC
[ENA]
¡û
>W1711138880
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1286209
1286283
+
Val
GAC
[ENA]
¡û
>W1711180111
LWIG01000007
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
80624
80550
-
Val
GAC
[ENA]
¡û
>W1711317167
MAXB01000044
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
14523
14449
-
Val
GAC
[ENA]
¡û
>W1711501345
MKRN01000016
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
4893
4967
+
Val
GAC
[ENA]
¡û
>W1711928924
NAFK01000175
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
127930
127856
-
Val
GAC
[ENA]
¡û
>W1712049614
NFUH01000231
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
78086
78012
-
Val
GAC
[ENA]
¡û
>W131066736
ANPA01000014
Alphaproteobacteria
Methylobacterium mesophilicum SR1.6/6 [ANPA]
6432
6358
-
Val
GAC
[ENA]
¡û
>C171021110
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
8617964
8617890
-
Val
GAC
-
¡û
>C171131958
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
6159698
6159624
-
Val
GAC
-
¡û
>W131165008
ARBF01000084
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
5979
5905
-
Val
GAC
[ENA]
¡û
>W131170242
ARFJ01000010
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
222567
222493
-
Val
GAC
[ENA]
¡û
>W131217292
ATWP01000001
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
695763
695837
+
Val
GAC
[ENA]
¡û
>W131227267
AUFA01000008
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
308548
308474
-
Val
GAC
[ENA]
¡û
>W131228665
AUGD01000001
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
433656
433582
-
Val
GAC
[ENA]
¡û
>C003063
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
8472878
8472804
-
Val
GAC
[Ensembl]
¡û
>C004040
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
1490439
1490513
+
Val
GAC
[Ensembl]
¡û
>C004105
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
6448749
6448675
-
Val
GAC
[Ensembl]
¡û
>W141001330
ADOU01000146
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
83205
83131
-
Val
GAC
[ENA]
¡û
>W141041841
AMCQ01000443
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
489
563
+
Val
GAC
[ENA]
¡û
>WENV181166546
OEIU01000566
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
257
331
+
Val
GAC
[ENA]
¢þ
>WENV181167144
OEIU01010294
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2240
2314
+
Val
GAC
[ENA]
¢þ
>WENV181167849
OEIU01089687
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
768
842
+
Val
GAC
[ENA]
¢þ
>W141149762
AWZU01000026
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
89285
89211
-
Val
GAC
[ENA]
¡û
>W141150045
AXAB01000028
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
27281
27355
+
Val
GAC
[ENA]
¡û
>W141150145
AXAD01000014
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
134566
134640
+
Val
GAC
[ENA]
¡û
>W141150221
AXAF01000004
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
289551
289625
+
Val
GAC
[ENA]
¡û
>W141150384
AXAI01000013
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
92462
92388
-
Val
GAC
[ENA]
¡û
>W141150987
AXAS01000008
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
217749
217823
+
Val
GAC
[ENA]
¡û
>W141151049
AXAT01000103
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
9540
9466
-
Val
GAC
[ENA]
¡û
>W141151240
AXAX01000010
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
240249
240323
+
Val
GAC
[ENA]
¡û
>W141151327
AXAZ01000018
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
53609
53683
+
Val
GAC
[ENA]
¡û
>W141151493
AXBC01000008
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
1280799
1280873
+
Val
GAC
[ENA]
¡û
>W141233876
BAWE01000002
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
389468
389394
-
Val
GAC
[ENA]
¡û
>WENV182406751
OIFA01001131
[OIFA] human gut metagenome; stool
758
684
-
Val
GAC
[ENA]
¢þ
>WENV182409099
OIFG01001705
[OIFG] human gut metagenome; stool
2378
2304
-
Val
GAC
[ENA]
¢þ
>WENV182411643
OIFP01009808
[OIFP] human gut metagenome; stool
552
478
-
Val
GAC
[ENA]
¢þ
>W141240072
CAFK01000046
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
40861
40787
-
Val
GAC
[ENA]
¡û
>WENV182962866
OKWO01002081
[OKWO] human gut metagenome; stool
202
276
+
Val
GAC
[ENA]
¢þ
>WENV182963106
OKWP01000278
[OKWP] human gut metagenome; stool
5045
4971
-
Val
GAC
[ENA]
¢þ
>WENV182966585
OKWW01002542
[OKWW] human gut metagenome; stool
535
609
+
Val
GAC
[ENA]
¢þ
>W09104129
AALJ01000009
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
197197
197271
+
Val
GAC
[ENA]
¡û
>WENV170961920
MLJW01006887
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
716
642
-
Val
GAC
[ENA]
¢þ
>C181178142
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
3579695
3579769
+
Val
GAC
-
¡û
>C181181566
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
8755852
8755778
-
Val
GAC
-
¡û
>C181203844
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
983765
983839
+
Val
GAC
-
¡û
>C191019677
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
489334
489408
+
Val
GAC
-
¡û
>C191019728
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
1473164
1473238
+
Val
GAC
-
¡û
>C191071681
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
6748972
6748898
-
Val
GAC
-
¡û
>C191071731
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
6455555
6455481
-
Val
GAC
-
¡û
>C191092033
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
8408516
8408442
-
Val
GAC
-
¡û
>W1910598237
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
1750381
1750455
+
Val
GAC
[ENA]
¡û
>W1910598939
LBJC01000023
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
236931
236857
-
Val
GAC
[ENA]
¡û
>W1910598990
LBJM01000030
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
117933
118007
+
Val
GAC
[ENA]
¡û
>W1910599058
LBJQ01000090
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
236909
236835
-
Val
GAC
[ENA]
¡û
>W1910611535
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
38518
38592
+
Val
GAC
[ENA]
¡û
>W1911409792
NWTE01000010
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
276635
276709
+
Val
GAC
[ENA]
¡û
>W1911409823
NWTF01000003
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
41375
41449
+
Val
GAC
[ENA]
¡û
>W1911409984
NWTI01000001
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
294130
294204
+
Val
GAC
[ENA]
¡û
>W1911629614
PSRT01000110
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
14382
14308
-
Val
GAC
[ENA]
¡û
>W1911817878
QZMV01000009
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
193268
193342
+
Val
GAC
[ENA]
¡û
>W1810089264
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
1031430
1031504
+
Val
GAC
[ENA]
¡û
>W1810104429
PGVG01000020
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
124723
124649
-
Val
GAC
[ENA]
¡û
>W1810289877
PTFE01000073
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
14787
14861
+
Val
GAC
[ENA]
¡û
>W1510973712
JGCL01000002
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
532114
532040
-
Val
GAC
[ENA]
¡û
>W1511706714
LGUJ01000021
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
239991
240065
+
Val
GAC
[ENA]
¡û
>C161001056
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
1877910
1877836
-
Val
GAC
-
¡û
>C161034241
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
7792517
7792443
-
Val
GAC
-
¡û
>C161062520
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
1201107
1201181
+
Val
GAC
[Ensembl]
¡û
>W121065550
AJQC01000589
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
10420
10494
+
Val
GAC
[ENA]
¡û
>W121065574
AJQD01000244
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
12464
12390
-
Val
GAC
[ENA]
¡û
>W121065628
AJQE01000175
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
44585
44511
-
Val
GAC
[ENA]
¡û
>W121065664
AJQF01000113
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
124
50
-
Val
GAC
[ENA]
¡û
>W121065716
AJQG01000173
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
8554
8480
-
Val
GAC
[ENA]
¡û
>W121065781
AJQH01000270
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
26051
25977
-
Val
GAC
[ENA]
¡û
>W121065816
AJQI01000194
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
11210
11284
+
Val
GAC
[ENA]
¡û
>W121065849
AJQJ01000094
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
22732
22806
+
Val
GAC
[ENA]
¡û
>W121065896
AJQK01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
3072
3146
+
Val
GAC
[ENA]
¡û
>W121065942
AJQL01000029
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
14142
14216
+
Val
GAC
[ENA]
¡û
>W121127064
CAFH01000030
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
11200
11126
-
Val
GAC
[ENA]
¡û
>W121127107
CAFI01000006
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
24541
24467
-
Val
GAC
[ENA]
¡û
>W121127156
CAFJ01000076
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
6894
6820
-
Val
GAC
[ENA]
¡û
>C131000827
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
7189644
7189570
-
Val
GAC
[Ensembl]
¡û
>W1610514418
FMAE01000003
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
286762
286836
+
Val
GAC
[ENA]
¡û
>W1610514637
FMAI01000047
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
26608
26682
+
Val
GAC
[ENA]
¡û
>W1610550283
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
648242
648316
+
Val
GAC
[ENA]
¡û
>W1610666834
LJYF01000029
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
595557
595483
-
Val
GAC
[ENA]
¡û
>W1610666884
LJYG01000101
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
130718
130644
-
Val
GAC
[ENA]
¡û
>W1610717407
LLXZ01000181
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
65841
65915
+
Val
GAC
[ENA]
¡û
>W1610717498
LLYB01000094
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
127426
127352
-
Val
GAC
[ENA]
¡û
>W1610735694
LMMS01000008
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
22856
22930
+
Val
GAC
[ENA]
¡û
>W1610740095
LMQJ01000023
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
208401
208475
+
Val
GAC
[ENA]
¡û
>W1610740864
LMRA01000004
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
141547
141621
+
Val
GAC
[ENA]
¡û
>W1610907963
LSEF01000041
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
84408
84482
+
Val
GAC
[ENA]
¡û
>W1610912259
LSIC01000124
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
49864
49938
+
Val
GAC
[ENA]
¡û
>W1610935762
LUKO01000154
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
92808
92882
+
Val
GAC
[ENA]
¡û
>W1610940688
LUUB01000080
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
261962
261888
-
Val
GAC
[ENA]
¡û
>W1610949888
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1286209
1286283
+
Val
GAC
[ENA]
¡û
>W1611061237
MAXB01000044
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
14523
14449
-
Val
GAC
[ENA]
¡û
>W1710500108
FMAE01000003
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
286762
286836
+
Val
GAC
[ENA]
¡û
>W1710500327
FMAI01000047
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
26608
26682
+
Val
GAC
[ENA]
¡û
>W1710516767
FNCU01000025
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
30729
30655
-
Val
GAC
[ENA]
¡û
>W1710563056
FOPK01000001
Alphaproteobacteria
Methylobacterium phyllosphaerae [FOPK]
160206
160132
-
Val
GAC
[ENA]
¡û
>W1710564270
FOQJ01000004
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
494263
494337
+
Val
GAC
[ENA]
¡û
>W1710564444
FOQM01000028
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
103846
103920
+
Val
GAC
[ENA]
¡û
>W1710569800
FOUS01000005
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
260531
260457
-
Val
GAC
[ENA]
¡û
>W1710571286
FOVU01000001
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
256191
256117
-
Val
GAC
[ENA]
¡û
>W1710578519
FPBQ01000007
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
241411
241485
+
Val
GAC
[ENA]
¡û
>W1710659009
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
648242
648316
+
Val
GAC
[ENA]
¡û
>W1710735658
LGHL01000165
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
15168
15242
+
Val
GAC
[ENA]
¡û
>W1710735709
LGHM01000168
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
4015
4089
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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