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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399896 (16 seq.)
>W1711272474
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522473
522399
-
Asn
GTT
[ENA]
¡û
>C171100348
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
670316
670390
+
Asn
GTT
-
¡û
>C171100393
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
627994
628068
+
Asn
GTT
-
¡û
>C007685
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
741036
741110
+
Asn
GTT
[Ensembl]
¡û
>WENV180013511
FMSI01094477
[FMSI] soil metagenome; Soil
2
76
+
Asn
GTT
[ENA]
¢þ
>WENV181409200
OGCI01000030
[OGCI] hot springs metagenome; Hot spring water
136119
136045
-
Asn
GTT
[ENA]
¢þ
>WENV170227946
CEQF01154665
[CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
878
804
-
Asn
GTT
[ENA]
¢þ
>WENV170379575
CETV01137786
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
933
859
-
Asn
GTT
[ENA]
¢þ
>WENV170527303
CEWI01136728
[CEWI] marine metagenome genome assembly TARA_111_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
586
660
+
Asn
GTT
[ENA]
¢þ
>C181003131
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
652321
652395
+
Asn
GTT
-
¡û
>W1810266193
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
404309
404383
+
Asn
GTT
[ENA]
¡û
>C151015169
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
733719
733793
+
Asn
GTT
[Ensembl]
¡û
>SRA1035550
SRR035089.328871
454 Sequencing (SRP001810)
142
68
-
Asn
GTT
[SRA]
>W1610521054
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67415
67341
-
Asn
GTT
[ENA]
¡û
>W1611032002
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522473
522399
-
Asn
GTT
[ENA]
¡û
>W1710617304
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67415
67341
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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