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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400028 (105 seq.)
>W1710852976
LLWF02000001
Alphaproteobacteria
Roseomonas mucosa [LLWF]
199769
199843
+
Met
CAT
[ENA]
¡û
>W1711116548
LUCI01000007
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
13496
13422
-
Met
CAT
[ENA]
¡û
>W1711116600
LUCJ01000011
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
119025
118951
-
Met
CAT
[ENA]
¡û
>W1711143138
LVHD01000018
Alphaproteobacteria
Acetobacter malorum [LVHD]
834998
834924
-
Met
CAT
[ENA]
¡û
>W1711466195
MJMD01000043
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
114176
114250
+
Met
CAT
[ENA]
¡û
>W1711466255
MJME01000116
Alphaproteobacteria
Novacetimonas hansenii [MJME]
6743
6669
-
Met
CAT
[ENA]
¡û
>W1711466274
MJMF01000037
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
112438
112512
+
Met
CAT
[ENA]
¡û
>W1711503719
MKTV01000103
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
3395
3321
-
Met
CAT
[ENA]
¡û
>W1711577307
MNPS01000002
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
207684
207758
+
Met
CAT
[ENA]
¡û
>W1711577360
MNPT01000003
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
191337
191411
+
Met
CAT
[ENA]
¡û
>W131222532
AUBI01000013
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
67292
67366
+
Met
CAT
[ENA]
¡û
>C171032870
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1630914
1630988
+
Met
CAT
-
¡û
>C171032964
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1070826
1070752
-
Met
CAT
-
¡û
>C171032974
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
542795
542869
+
Met
CAT
-
¡û
>C171033126
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
565711
565637
-
Met
CAT
-
¡û
>C171039533
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1192828
1192902
+
Met
CAT
-
¡û
>C171108997
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
1780622
1780696
+
Met
CAT
-
¡û
>WENV180100562
OAOO01006551
[OAOO] marine metagenome; ENVO:00002010
149
223
+
Met
CAT
[ENA]
¢þ
>W141200333
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
330772
330846
+
Met
CAT
[ENA]
¡û
>W08009495
ABPH01000002
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
154721
154650
-
Met
CAT
[ENA]
¡û
>W141226059
BAJT01000003
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
89087
89013
-
Met
CAT
[ENA]
¡û
>W141226150
BAJV01000002
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
238481
238407
-
Met
CAT
[ENA]
¡û
>W141226184
BAJW01000002
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
98029
98103
+
Met
CAT
[ENA]
¡û
>W141227248
BAKW01000003
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
96987
97061
+
Met
CAT
[ENA]
¡û
>W141229587
BAND01000060
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
2543
2469
-
Met
CAT
[ENA]
¡û
>W141247938
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
235427
235353
-
Met
CAT
[ENA]
¡û
>W141248000
CBLY010000006
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
161553
161479
-
Met
CAT
[ENA]
¡û
>C08005274
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
1819295
1819224
-
Met
CAT
[Ensembl]
¡û
>W141276616
JADY01000001
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
477182
477108
-
Met
CAT
[ENA]
¡û
>WENV183676979
ORJL011694879
[ORJL] groundwater metagenome; groundwater
365
291
-
Met
CAT
[ENA]
¢þ
>C181071389
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
2730179
2730105
-
Met
CAT
-
¡û
>C181102046
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
1571826
1571752
-
Met
CAT
-
¡û
>W141558716
JHWD01000004
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
56902
56828
-
Met
CAT
[ENA]
¡û
>W141726100
JNAB01000023
Alphaproteobacteria
Kozakia baliensis [JNAB]
130404
130330
-
Met
CAT
[ENA]
¡û
>W141775563
JOJU01000067
Alphaproteobacteria
Acetobacter malorum [JOJU]
834210
834136
-
Met
CAT
[ENA]
¡û
>W1910181780
BJMI01000008
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
49446
49372
-
Met
CAT
[ENA]
¡û
>W1910182310
BJMU01000001
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
166862
166936
+
Met
CAT
[ENA]
¡û
>W1910183226
BJNN01000098
Alphaproteobacteria
Novacetimonas hansenii NBRC 14820 [BJNN]
72084
72158
+
Met
CAT
[ENA]
¡û
>W1910695593
MDVY01000109
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
39635
39561
-
Met
CAT
[ENA]
¡û
>W1910697244
MEJG01000004
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
48452
48526
+
Met
CAT
[ENA]
¡û
>W1910990724
NKUD01000008
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
114258
114332
+
Met
CAT
[ENA]
¡û
>W1910990762
NKUE01000003
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
171520
171446
-
Met
CAT
[ENA]
¡û
>W1910990806
NKUF01000004
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
13795
13869
+
Met
CAT
[ENA]
¡û
>W1911138397
NOXG01000005
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
84487
84413
-
Met
CAT
[ENA]
¡û
>C09106336
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
21132
21058
-
Met
CAT
[Ensembl]
¡û
>W1911410416
NWTP01000001
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
167142
167216
+
Met
CAT
[ENA]
¡û
>W1911597834
PNQZ01000059
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
43597
43671
+
Met
CAT
[ENA]
¡û
>W1810044990
LMYH01000012
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
208362
208436
+
Met
CAT
[ENA]
¡û
>W1810045060
LMYI01000014
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
51168
51242
+
Met
CAT
[ENA]
¡û
>W1810045103
LMYJ01000011
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
89629
89555
-
Met
CAT
[ENA]
¡û
>W1810223463
POTC01000001
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
85236
85310
+
Met
CAT
[ENA]
¡û
>W1810268383
PRCW01000049
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
68694
68768
+
Met
CAT
[ENA]
¡û
>W1810583858
QEXL01000017
Alphaproteobacteria
Novacetimonas cocois WE7 [QEXL]
69171
69245
+
Met
CAT
[ENA]
¡û
>W1810763158
QQAW01000009
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
49540
49466
-
Met
CAT
[ENA]
¡û
>W10117685
ADTV01000041
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
72085
72159
+
Met
CAT
[ENA]
¡û
>W1511271199
JOKM01000102
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
118072
117998
-
Met
CAT
[ENA]
¡û
>W11122674
ADTV01000041
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
72085
72159
+
Met
CAT
[ENA]
¡û
>W11184360
BABS01000011
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
17116
17190
+
Met
CAT
[ENA]
¡û
>C161001113
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1287988
1287914
-
Met
CAT
[Ensembl]
¡û
>C161105524
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
3783182
3783256
+
Met
CAT
[Ensembl]
¡û
>W1610040666
BALE01000034
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
43426
43500
+
Met
CAT
[ENA]
¡û
>W1610040762
BAMV01000018
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
131543
131617
+
Met
CAT
[ENA]
¡û
>W1610040882
BAMY01000021
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
49797
49723
-
Met
CAT
[ENA]
¡û
>W1610041021
BANB01000567
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
4570
4496
-
Met
CAT
[ENA]
¡û
>W1610041096
BANE01000166
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
1119
1045
-
Met
CAT
[ENA]
¡û
>W121016315
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
242582
242656
+
Met
CAT
[ENA]
¡û
>W121113822
ALOX01000009
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
48724
48650
-
Met
CAT
[ENA]
¡û
>W1610187966
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1597052
1597126
+
Met
CAT
[ENA]
¡û
>W1610623982
LHZA01000157
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
200657
200583
-
Met
CAT
[ENA]
¡û
>W1610624061
LHZC01000031
Alphaproteobacteria
Acetobacter malorum [LHZC]
9626
9552
-
Met
CAT
[ENA]
¡û
>W1610624243
LHZF01000176
Alphaproteobacteria
Acetobacter malorum [LHZF]
296575
296501
-
Met
CAT
[ENA]
¡û
>W1610624368
LHZI01001639
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2137
2063
-
Met
CAT
[ENA]
¡û
>W1610624880
LHZT01000132
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
153052
152978
-
Met
CAT
[ENA]
¡û
>W1610624905
LHZU01000133
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
13126
13052
-
Met
CAT
[ENA]
¡û
>W1610624967
LHZV01000067
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
40331
40405
+
Met
CAT
[ENA]
¡û
>W1610625055
LHZX01000319
Alphaproteobacteria
Acetobacter malorum [LHZX]
168318
168392
+
Met
CAT
[ENA]
¡û
>W1610625061
LHZY01000001
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
113099
113025
-
Met
CAT
[ENA]
¡û
>W1610625134
LHZZ01000629
Alphaproteobacteria
Acetobacter malorum [LHZZ]
6323
6249
-
Met
CAT
[ENA]
¡û
>W1610625167
LIAA01000032
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
279469
279395
-
Met
CAT
[ENA]
¡û
>W1610927907
LUCI01000007
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
13496
13422
-
Met
CAT
[ENA]
¡û
>W1610927959
LUCJ01000011
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
119025
118951
-
Met
CAT
[ENA]
¡û
>W1610954146
LVHD01000018
Alphaproteobacteria
Acetobacter malorum [LVHD]
834998
834924
-
Met
CAT
[ENA]
¡û
>W1710037864
BALE01000034
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
43426
43500
+
Met
CAT
[ENA]
¡û
>W1710037960
BAMV01000018
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
131543
131617
+
Met
CAT
[ENA]
¡û
>W1710038080
BAMY01000021
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
49797
49723
-
Met
CAT
[ENA]
¡û
>W1710038219
BANB01000567
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
4570
4496
-
Met
CAT
[ENA]
¡û
>W1710038294
BANE01000166
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
1119
1045
-
Met
CAT
[ENA]
¡û
>W1710084290
BDLP01000263
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
2395
2321
-
Met
CAT
[ENA]
¡û
>W1710189582
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1597052
1597126
+
Met
CAT
[ENA]
¡û
>W1710624264
JOMM01000020
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
25678
25604
-
Met
CAT
[ENA]
¡û
>W1710624445
JOMQ01000054
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
22754
22828
+
Met
CAT
[ENA]
¡û
>W1710624499
JOOZ01000025
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
98750
98676
-
Met
CAT
[ENA]
¡û
>W1710624628
JOPC01000016
Alphaproteobacteria
Acetobacter persici [JOPC]
143439
143513
+
Met
CAT
[ENA]
¡û
>W1710624779
JOPG01000022
Alphaproteobacteria
Acetobacter malorum [JOPG]
53976
54050
+
Met
CAT
[ENA]
¡û
>W1710624948
JOPL01000017
Alphaproteobacteria
Acetobacter sp. DsW_063 [JOPL]
55108
55182
+
Met
CAT
[ENA]
¡û
>W1710755100
LHZA01000157
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
200657
200583
-
Met
CAT
[ENA]
¡û
>W1710755179
LHZC01000031
Alphaproteobacteria
Acetobacter malorum [LHZC]
9626
9552
-
Met
CAT
[ENA]
¡û
>W1710755361
LHZF01000176
Alphaproteobacteria
Acetobacter malorum [LHZF]
296575
296501
-
Met
CAT
[ENA]
¡û
>W1710755998
LHZT01000132
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
153052
152978
-
Met
CAT
[ENA]
¡û
>W1710756023
LHZU01000133
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
13126
13052
-
Met
CAT
[ENA]
¡û
>W1710756085
LHZV01000067
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
40331
40405
+
Met
CAT
[ENA]
¡û
>W1710756173
LHZX01000319
Alphaproteobacteria
Acetobacter malorum [LHZX]
168318
168392
+
Met
CAT
[ENA]
¡û
>W1710756179
LHZY01000001
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
113099
113025
-
Met
CAT
[ENA]
¡û
>W1710756252
LHZZ01000629
Alphaproteobacteria
Acetobacter malorum [LHZZ]
6323
6249
-
Met
CAT
[ENA]
¡û
>W1710756285
LIAA01000032
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
279469
279395
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK