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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400030 (61 seq.)
>W1710989967
LPWU01000130
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
95087
95013
-
Thr
TGT
[ENA]
¡û
>W1711257966
LYUD01000156
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
19842
19916
+
Thr
TGT
[ENA]
¡û
>C171036150
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
2410610
2410684
+
Thr
TGT
-
¡û
>C171036243
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
816474
816400
-
Thr
TGT
-
¡û
>C171120259
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
1164987
1165061
+
Thr
TGT
-
¡û
>C171120354
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
1359411
1359337
-
Thr
TGT
-
¡û
>C171126452
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
1454216
1454142
-
Thr
TGT
-
¡û
>W141224581
BAIN01000070
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
534
460
-
Thr
TGT
[ENA]
¡û
>W141428592
JEOA01000001
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
390641
390567
-
Thr
TGT
[ENA]
¡û
>WENV170669504
LAHS01000362
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
180055
179981
-
Thr
TGT
[ENA]
¢þ
>C181063312
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
3013406
3013480
+
Thr
TGT
-
¡û
>C181071358
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
794588
794662
+
Thr
TGT
-
¡û
>C181077183
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
100706
100632
-
Thr
TGT
-
¡û
>C181088323
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
1639790
1639716
-
Thr
TGT
-
¡û
>C181193645
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
2675722
2675796
+
Thr
TGT
-
¡û
>W1910007941
BDER01000072
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
42849
42923
+
Thr
TGT
[ENA]
¡û
>W1910007987
BDES01000069
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
42889
42963
+
Thr
TGT
[ENA]
¡û
>W1910008047
BDET01000088
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
42934
43008
+
Thr
TGT
[ENA]
¡û
>W1910008093
BDEU01000090
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
27140
27214
+
Thr
TGT
[ENA]
¡û
>W1910008147
BDEV01000099
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
27336
27410
+
Thr
TGT
[ENA]
¡û
>W1910008205
BDEW01000090
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
15495
15569
+
Thr
TGT
[ENA]
¡û
>W1910008252
BDEX01000095
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
27264
27338
+
Thr
TGT
[ENA]
¡û
>W1910008311
BDEY01000094
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
15495
15569
+
Thr
TGT
[ENA]
¡û
>W1910008358
BDEZ01000056
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
15530
15604
+
Thr
TGT
[ENA]
¡û
>W1910182376
BJMV01000006
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
170439
170365
-
Thr
TGT
[ENA]
¡û
>C141012361
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
1484327
1484401
+
Thr
TGT
[Ensembl]
¡û
>W1910657434
MAPU01000003
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
15580
15654
+
Thr
TGT
[ENA]
¡û
>W1910753221
MKHC01000011
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
59824
59750
-
Thr
TGT
[ENA]
¡û
>W1810069694
PEBQ01000087
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
32563
32637
+
Thr
TGT
[ENA]
¡û
>C151091070
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
765420
765494
+
Thr
TGT
[Ensembl]
¡û
>W1510011569
BBMU01000193
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
22828
22902
+
Thr
TGT
[ENA]
¡û
>C10100660
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
2728817
2728891
+
Thr
TGT
[Ensembl]
¡û
>C10100714
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
2821071
2821145
+
Thr
TGT
[Ensembl]
¡û
>C10100771
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
2820863
2820937
+
Thr
TGT
[Ensembl]
¡û
>C10100828
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2819620
2819694
+
Thr
TGT
[Ensembl]
¡û
>C10100885
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2818200
2818274
+
Thr
TGT
[Ensembl]
¡û
>C10100942
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
2820843
2820917
+
Thr
TGT
[Ensembl]
¡û
>C10100999
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
2820885
2820959
+
Thr
TGT
[Ensembl]
¡û
>C10101056
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2818218
2818292
+
Thr
TGT
[Ensembl]
¡û
>W1511271159
JOKL01000080
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
127780
127706
-
Thr
TGT
[ENA]
¡û
>W1511271212
JOKM01000123
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
66460
66386
-
Thr
TGT
[ENA]
¡û
>W11149312
AEUP01000014
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
42774
42848
+
Thr
TGT
[ENA]
¡û
>W11184371
BABS01000024
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
14496
14422
-
Thr
TGT
[ENA]
¡û
>C161001899
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2826348
2826422
+
Thr
TGT
-
¡û
>C161031447
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
2724544
2724618
+
Thr
TGT
[Ensembl]
¡û
>C161105535
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
1691203
1691129
-
Thr
TGT
[Ensembl]
¡û
>W121122955
BACF01000004
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
95087
95013
-
Thr
TGT
[ENA]
¡û
>W121123010
BACG01000012
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
30011
29937
-
Thr
TGT
[ENA]
¡û
>W121126843
CADO01000001
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
42822
42896
+
Thr
TGT
[ENA]
¡û
>W121126911
CADQ01000031
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
143960
143886
-
Thr
TGT
[ENA]
¡û
>W1610624723
LHZQ01000211
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
22867
22941
+
Thr
TGT
[ENA]
¡û
>W1610624855
LHZT01000120
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
22875
22949
+
Thr
TGT
[ENA]
¡û
>W1610624917
LHZU01000144
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
47080
47154
+
Thr
TGT
[ENA]
¡û
>W1611020438
LYUD01000156
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
19842
19916
+
Thr
TGT
[ENA]
¡û
>W1710624255
JOMM01000014
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
66440
66366
-
Thr
TGT
[ENA]
¡û
>W1710624293
JOMN01000008
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
149404
149478
+
Thr
TGT
[ENA]
¡û
>W1710624508
JOOZ01000044
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
48082
48156
+
Thr
TGT
[ENA]
¡û
>W1710624853
JOPI01000036
Alphaproteobacteria
Acetobacter sp. DsW_059 [JOPI]
34263
34189
-
Thr
TGT
[ENA]
¡û
>W1710755841
LHZQ01000211
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
22867
22941
+
Thr
TGT
[ENA]
¡û
>W1710755973
LHZT01000120
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
22875
22949
+
Thr
TGT
[ENA]
¡û
>W1710756035
LHZU01000144
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
47080
47154
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK