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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400045 (94 seq.)
>W1711129189
LUTU01000008
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
59934
60008
+
Gly
GCC
[ENA]
¡û
>W1711129190
LUTU01000008
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
60143
60217
+
Gly
GCC
[ENA]
¡û
>W1711143177
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
117519
117445
-
Gly
GCC
[ENA]
¡û
>W1711143178
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
117310
117236
-
Gly
GCC
[ENA]
¡û
>C171033048
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
2499515
2499441
-
Gly
GCC
-
¡û
>W131240777
BAON01000001
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
141092
141018
-
Gly
GCC
[ENA]
¡û
>W131240778
BAON01000001
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
140883
140809
-
Gly
GCC
[ENA]
¡û
>W131241396
BARL01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
282053
281979
-
Gly
GCC
[ENA]
¡û
>W131241397
BARL01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
281843
281769
-
Gly
GCC
[ENA]
¡û
>WENV180375410
OBOL01007681
[OBOL] marine metagenome; Surface water
290
364
+
Gly
GCC
[ENA]
¢þ
>WENV180378461
OBOO01050455
[OBOO] marine metagenome; ENVO 00002150
131
205
+
Gly
GCC
[ENA]
¢þ
>W141229927
BASM01000013
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
141098
141024
-
Gly
GCC
[ENA]
¡û
>W141229928
BASM01000013
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
140889
140815
-
Gly
GCC
[ENA]
¡û
>WENV170014107
AVFP01008478
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
751
677
-
Gly
GCC
[ENA]
¢þ
>WENV170331739
CESW01087958
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1214
1140
-
Gly
GCC
[ENA]
¢þ
>WENV170460112
CEVC01115074
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
271
197
-
Gly
GCC
[ENA]
¢þ
>WENV170460615
CEVC01165123
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
570
496
-
Gly
GCC
[ENA]
¢þ
>WENV170460619
CEVC01165284
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
572
498
-
Gly
GCC
[ENA]
¢þ
>WENV170585727
FUFK010320450
[FUFK] metagenome; unknown
601
675
+
Gly
GCC
[ENA]
¢þ
>WENV170586615
FUFK010431898
[FUFK] metagenome; unknown
1339
1265
-
Gly
GCC
[ENA]
¢þ
>WENV170588671
FUFK010581109
[FUFK] metagenome; unknown
693
619
-
Gly
GCC
[ENA]
¢þ
>WENV170589270
FUFK010629457
[FUFK] metagenome; unknown
1476
1550
+
Gly
GCC
[ENA]
¢þ
>WENV170589883
FUFK010676174
[FUFK] metagenome; unknown
740
666
-
Gly
GCC
[ENA]
¢þ
>WENV170824077
MDSY01069333
[MDSY] marine metagenome; seawater
1393
1467
+
Gly
GCC
[ENA]
¢þ
>WENV170925094
MDTG01077621
[MDTG] marine metagenome; seawater
1180
1106
-
Gly
GCC
[ENA]
¢þ
>WENV170933392
MDTG01219989
[MDTG] marine metagenome; seawater
2557
2483
-
Gly
GCC
[ENA]
¢þ
>WENV170933575
MDTG01223155
[MDTG] marine metagenome; seawater
2590
2516
-
Gly
GCC
[ENA]
¢þ
>WENV170939375
MDTG01325276
[MDTG] marine metagenome; seawater
130
56
-
Gly
GCC
[ENA]
¢þ
>WENV170940103
MDTG01337518
[MDTG] marine metagenome; seawater
2358
2432
+
Gly
GCC
[ENA]
¢þ
>WENV170942746
MDTG01383665
[MDTG] marine metagenome; seawater
3128
3202
+
Gly
GCC
[ENA]
¢þ
>WENV170943760
MDTG01403297
[MDTG] marine metagenome; seawater
133
59
-
Gly
GCC
[ENA]
¢þ
>C191090645
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1358429
1358503
+
Gly
GCC
-
¡û
>C191090646
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1358629
1358703
+
Gly
GCC
-
¡û
>C191157804
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
1195832
1195906
+
Gly
GCC
-
¡û
>C191157805
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
1196018
1196092
+
Gly
GCC
-
¡û
>W1910954250
NJPP01000005
Alphaproteobacteria
Bartonella tribocorum C635 [NJPP]
71494
71568
+
Gly
GCC
[ENA]
¡û
>W1810000601
BEWL01000003
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
122698
122624
-
Gly
GCC
[ENA]
¡û
>W1810000646
BEWM01000002
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
439495
439569
+
Gly
GCC
[ENA]
¡û
>W1810000647
BEWM01000002
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
439704
439778
+
Gly
GCC
[ENA]
¡û
>W1810000693
BEWN01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
432966
433040
+
Gly
GCC
[ENA]
¡û
>W1810000694
BEWN01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
433175
433249
+
Gly
GCC
[ENA]
¡û
>W1810000767
BEWO01000020
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
30224
30150
-
Gly
GCC
[ENA]
¡û
>W1810000768
BEWO01000020
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
30014
29940
-
Gly
GCC
[ENA]
¡û
>W1810000781
BEWP01000002
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
143115
143041
-
Gly
GCC
[ENA]
¡û
>W1511620424
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
1020389
1020463
+
Gly
GCC
[ENA]
¡û
>W1511620425
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
1020598
1020672
+
Gly
GCC
[ENA]
¡û
>C161096041
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
438232
438158
-
Gly
GCC
-
¡û
>C161096042
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
438023
437949
-
Gly
GCC
-
¡û
>W121016332
AGQV01000005
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
44375
44301
-
Gly
GCC
[ENA]
¡û
>W121016333
AGQV01000005
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
44167
44093
-
Gly
GCC
[ENA]
¡û
>W121034260
AHKI01000015
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
29773
29699
-
Gly
GCC
[ENA]
¡û
>W121034261
AHKI01000015
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
29564
29490
-
Gly
GCC
[ENA]
¡û
>W121123440
BADZ01000132
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
112
38
-
Gly
GCC
[ENA]
¡û
>W1610076830
BCZB01000001
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
68539
68613
+
Gly
GCC
[ENA]
¡û
>W1610076831
BCZB01000001
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
68741
68815
+
Gly
GCC
[ENA]
¡û
>C131009942
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1439401
1439475
+
Gly
GCC
[Ensembl]
¡û
>C131009943
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1439610
1439684
+
Gly
GCC
[Ensembl]
¡û
>W1610624315
LHZH01000124
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
56823
56897
+
Gly
GCC
[ENA]
¡û
>W1610624316
LHZH01000124
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
57033
57107
+
Gly
GCC
[ENA]
¡û
>W1610624355
LHZI01001553
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3773
3847
+
Gly
GCC
[ENA]
¡û
>W1610624356
LHZI01001553
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3983
4057
+
Gly
GCC
[ENA]
¡û
>W1610624424
LHZJ01000085
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
150248
150322
+
Gly
GCC
[ENA]
¡û
>W1610624425
LHZJ01000085
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
150458
150532
+
Gly
GCC
[ENA]
¡û
>W1610624554
LHZM01000089
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
220701
220627
-
Gly
GCC
[ENA]
¡û
>W1610624555
LHZM01000089
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
220492
220418
-
Gly
GCC
[ENA]
¡û
>W1610624588
LHZN01000131
Alphaproteobacteria
Gluconobacter albidus [LHZN]
45518
45592
+
Gly
GCC
[ENA]
¡û
>W1610624633
LHZO01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
40982
41056
+
Gly
GCC
[ENA]
¡û
>W1610624634
LHZO01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
41192
41266
+
Gly
GCC
[ENA]
¡û
>W1610624831
LHZS01000106
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
146792
146866
+
Gly
GCC
[ENA]
¡û
>W1610624832
LHZS01000106
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
147001
147075
+
Gly
GCC
[ENA]
¡û
>W1610625012
LHZW01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
21698
21624
-
Gly
GCC
[ENA]
¡û
>W1610625013
LHZW01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
21476
21402
-
Gly
GCC
[ENA]
¡û
>W1610940262
LUTU01000008
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
59934
60008
+
Gly
GCC
[ENA]
¡û
>W1610940263
LUTU01000008
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
60143
60217
+
Gly
GCC
[ENA]
¡û
>W1610954185
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
117519
117445
-
Gly
GCC
[ENA]
¡û
>W1610954186
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
117310
117236
-
Gly
GCC
[ENA]
¡û
>W1710074519
BCZB01000001
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
68539
68613
+
Gly
GCC
[ENA]
¡û
>W1710074520
BCZB01000001
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
68741
68815
+
Gly
GCC
[ENA]
¡û
>W1710624731
JOPF01000010
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
121773
121699
-
Gly
GCC
[ENA]
¡û
>W1710624800
JOPH01000005
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
235118
235044
-
Gly
GCC
[ENA]
¡û
>W1710624821
JOPH01000078
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
72
1
-
Gly
GCC
[ENA]
¡û
>W1710755433
LHZH01000124
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
56823
56897
+
Gly
GCC
[ENA]
¡û
>W1710755434
LHZH01000124
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
57033
57107
+
Gly
GCC
[ENA]
¡û
>W1710755473
LHZI01001553
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3773
3847
+
Gly
GCC
[ENA]
¡û
>W1710755474
LHZI01001553
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
3983
4057
+
Gly
GCC
[ENA]
¡û
>W1710755542
LHZJ01000085
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
150248
150322
+
Gly
GCC
[ENA]
¡û
>W1710755543
LHZJ01000085
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
150458
150532
+
Gly
GCC
[ENA]
¡û
>W1710755672
LHZM01000089
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
220701
220627
-
Gly
GCC
[ENA]
¡û
>W1710755673
LHZM01000089
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
220492
220418
-
Gly
GCC
[ENA]
¡û
>W1710755706
LHZN01000131
Alphaproteobacteria
Gluconobacter albidus [LHZN]
45518
45592
+
Gly
GCC
[ENA]
¡û
>W1710755751
LHZO01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
40982
41056
+
Gly
GCC
[ENA]
¡û
>W1710755752
LHZO01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
41192
41266
+
Gly
GCC
[ENA]
¡û
>W1710755949
LHZS01000106
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
146792
146866
+
Gly
GCC
[ENA]
¡û
>W1710755950
LHZS01000106
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
147001
147075
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK