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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400048 (75 seq.)
>W1711143195
LVHE01000006
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
546622
546548
-
Thr
GGT
[ENA]
¡û
>W1711503717
MKTV01000097
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
46422
46496
+
Thr
GGT
[ENA]
¡û
>W1711577334
MNPS01000005
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
63005
62931
-
Thr
GGT
[ENA]
¡û
>W1711577358
MNPT01000002
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
306820
306746
-
Thr
GGT
[ENA]
¡û
>C171033102
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
3203349
3203275
-
Thr
GGT
-
¡û
>C171033172
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
1787137
1787063
-
Thr
GGT
-
¡û
>C171109024
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
815444
815370
-
Thr
GGT
-
¡û
>W131164880
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
3371177
3371251
+
Thr
GGT
[ENA]
¡û
>W131176035
ARJS01000044
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
23544
23470
-
Thr
GGT
[ENA]
¡û
>W131240802
BAON01000013
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
3573
3499
-
Thr
GGT
[ENA]
¡û
>W131241410
BARL01000005
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
123204
123278
+
Thr
GGT
[ENA]
¡û
>WENV015601
AACY020439237
Marine microbial communities from Global Ocean Sampling (GOS)
821
895
+
Thr
GGT
[ENA]
>w016558
AAQG01000030
Alphaproteobacteria
Sphingomonas sp. SKA58 [AAQG]
14335
14259
-
Thr
GGT
[ENA]
¡û
>WENV180045040
MOXS02073434
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
78
4
-
Thr
GGT
[ENA]
¢þ
>W141226078
BAJT01000010
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
113052
112978
-
Thr
GGT
[ENA]
¡û
>W141227265
BAKW01000011
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
30537
30611
+
Thr
GGT
[ENA]
¡û
>W141229924
BASM01000012
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
5430
5356
-
Thr
GGT
[ENA]
¡û
>W141247962
CBLY010000002
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
275504
275578
+
Thr
GGT
[ENA]
¡û
>WENV170191708
CEPD01053227
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
150
+
Thr
GGT
[ENA]
¢þ
>WENV170228713
CEQG01033837
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4924
4998
+
Thr
GGT
[ENA]
¢þ
>WENV170233073
CEQI01207998
[CEQI] marine metagenome genome assembly TARA_076_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
703
629
-
Thr
GGT
[ENA]
¢þ
>WENV170264952
CERD01091224
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
878
804
-
Thr
GGT
[ENA]
¢þ
>WENV170608858
FUWD011133290
[FUWD] metagenome; unknown
78
152
+
Thr
GGT
[ENA]
¢þ
>WENV170829691
MDSZ01013182
[MDSZ] marine metagenome; seawater
4469
4395
-
Thr
GGT
[ENA]
¢þ
>WENV170935015
MDTG01249262
[MDTG] marine metagenome; seawater
3138
3064
-
Thr
GGT
[ENA]
¢þ
>C191090648
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1556229
1556303
+
Thr
GGT
-
¡û
>C191100526
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
199763
199689
-
Thr
GGT
-
¡û
>C191157832
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
631464
631390
-
Thr
GGT
-
¡û
>W1910006539
BAGS01000025
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
23426
23500
+
Thr
GGT
[ENA]
¡û
>W1910697242
MEJG01000003
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
289351
289277
-
Thr
GGT
[ENA]
¡û
>W1911597840
PNQZ01000061
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
107959
108033
+
Thr
GGT
[ENA]
¡û
>W1810000549
BEWK01000002
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
71272
71198
-
Thr
GGT
[ENA]
¡û
>W1810000682
BEWN01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
104976
105050
+
Thr
GGT
[ENA]
¡û
>W1810000761
BEWO01000012
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
90588
90662
+
Thr
GGT
[ENA]
¡û
>W1810044971
LMYH01000003
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
261773
261699
-
Thr
GGT
[ENA]
¡û
>W1810045053
LMYI01000011
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
75110
75036
-
Thr
GGT
[ENA]
¡û
>W1810045076
LMYJ01000003
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
261874
261800
-
Thr
GGT
[ENA]
¡û
>W1810604043
QGLT01000005
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
53823
53749
-
Thr
GGT
[ENA]
¡û
>W1510741138
CYHC01000009
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
91828
91754
-
Thr
GGT
[ENA]
¡û
>W1511324647
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
174878
174952
+
Thr
GGT
[ENA]
¡û
>WENV044930
AACY022466666
Marine microbial communities from Global Ocean Sampling (GOS)
741
665
-
Thr
GGT
[ENA]
>W11184453
BABW01000073
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
895
821
-
Thr
GGT
[ENA]
¡û
>C161096005
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
1177975
1178049
+
Thr
GGT
-
¡û
>W1610040702
BAMU01000014
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
98824
98898
+
Thr
GGT
[ENA]
¡û
>W1610040995
BANB01000063
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
8362
8436
+
Thr
GGT
[ENA]
¡û
>W1610041179
BANG01000016
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
113641
113715
+
Thr
GGT
[ENA]
¡û
>W1610041209
BANH01000008
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
102869
102943
+
Thr
GGT
[ENA]
¡û
>W1610076833
BCZB01000001
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
247610
247684
+
Thr
GGT
[ENA]
¡û
>W121034272
AHKI01000039
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
23673
23747
+
Thr
GGT
[ENA]
¡û
>W121123424
BADZ01000010
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
33697
33623
-
Thr
GGT
[ENA]
¡û
>C131009988
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
701381
701307
-
Thr
GGT
[Ensembl]
¡û
>W1610624333
LHZH01000135
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
116619
116693
+
Thr
GGT
[ENA]
¡û
>W1610624379
LHZI01001745
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
5138
5212
+
Thr
GGT
[ENA]
¡û
>W1610624384
LHZJ01000046
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
9226
9300
+
Thr
GGT
[ENA]
¡û
>W1610624433
LHZK01000103
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
2461
2387
-
Thr
GGT
[ENA]
¡û
>W1610624558
LHZM01000090
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
132199
132273
+
Thr
GGT
[ENA]
¡û
>W1610624621
LHZO01000056
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
19780
19706
-
Thr
GGT
[ENA]
¡û
>W1610624794
LHZS01000073
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
22720
22794
+
Thr
GGT
[ENA]
¡û
>W1610954203
LVHE01000006
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
546622
546548
-
Thr
GGT
[ENA]
¡û
>W1710037900
BAMU01000014
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
98824
98898
+
Thr
GGT
[ENA]
¡û
>W1710038193
BANB01000063
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
8362
8436
+
Thr
GGT
[ENA]
¡û
>W1710038377
BANG01000016
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
113641
113715
+
Thr
GGT
[ENA]
¡û
>W1710038407
BANH01000008
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
102869
102943
+
Thr
GGT
[ENA]
¡û
>W1710074522
BCZB01000001
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
247610
247684
+
Thr
GGT
[ENA]
¡û
>W1710606271
FWXR01000002
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
140109
140035
-
Thr
GGT
[ENA]
¡û
>W1710613509
JATM01000002
Alphaproteobacteria
Bombella intestini [JATM]
107973
108047
+
Thr
GGT
[ENA]
¡û
>W1710624294
JOMN01000008
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
159493
159419
-
Thr
GGT
[ENA]
¡û
>W1710624852
JOPI01000036
Alphaproteobacteria
Acetobacter sp. DsW_059 [JOPI]
24170
24244
+
Thr
GGT
[ENA]
¡û
>W1710755451
LHZH01000135
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
116619
116693
+
Thr
GGT
[ENA]
¡û
>W1710755497
LHZI01001745
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
5138
5212
+
Thr
GGT
[ENA]
¡û
>W1710755502
LHZJ01000046
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
9226
9300
+
Thr
GGT
[ENA]
¡û
>W1710755551
LHZK01000103
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
2461
2387
-
Thr
GGT
[ENA]
¡û
>W1710755676
LHZM01000090
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
132199
132273
+
Thr
GGT
[ENA]
¡û
>W1710755739
LHZO01000056
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
19780
19706
-
Thr
GGT
[ENA]
¡û
>W1710755912
LHZS01000073
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
22720
22794
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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