This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400083 (82 seq.)
>W1710805258
LJZW01000012
Gammaproteobacteria
Xylella fastidiosa [LJZW]
167963
167889
-
Val
CAC
[ENA]
¡û
>W1710808074
LKDK01000011
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
75452
75378
-
Val
CAC
[ENA]
¡û
>W1710809635
LKES01000009
Gammaproteobacteria
Xylella fastidiosa [LKES]
11343
11417
+
Val
CAC
[ENA]
¡û
>W1711055755
LRVE01000015
Gammaproteobacteria
Xylella fastidiosa [LRVE]
116221
116295
+
Val
CAC
[ENA]
¡û
>W1711055818
LRVF01000075
Gammaproteobacteria
Xylella fastidiosa [LRVF]
19405
19331
-
Val
CAC
[ENA]
¡û
>W1711055861
LRVG01000055
Gammaproteobacteria
Xylella fastidiosa [LRVG]
11729
11803
+
Val
CAC
[ENA]
¡û
>W1711055920
LRVH01000163
Gammaproteobacteria
Xylella fastidiosa [LRVH]
16356
16282
-
Val
CAC
[ENA]
¡û
>W1711055935
LRVI01000007
Gammaproteobacteria
Xylella fastidiosa [LRVI]
312162
312236
+
Val
CAC
[ENA]
¡û
>W1711056024
LRVJ01000163
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
33207
33281
+
Val
CAC
[ENA]
¡û
>W1711078018
LSMJ01000009
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
286272
286198
-
Val
CAC
[ENA]
¡û
>W1711134765
LUYA01000002
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
120
46
-
Val
CAC
[ENA]
¡û
>W1711134809
LUYB01000002
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
212809
212883
+
Val
CAC
[ENA]
¡û
>W1711134884
LUYC01000008
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYC]
11875
11949
+
Val
CAC
[ENA]
¡û
>W1711618070
MPAZ01000004
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
79046
78972
-
Val
CAC
[ENA]
¡û
>C171002842
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
1502227
1502153
-
Val
CAC
-
¡û
>C171113943
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
590971
591045
+
Val
CAC
-
¡û
>W131221324
AUAJ01000008
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
79063
78989
-
Val
CAC
[ENA]
¡û
>C027148
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
649104
649178
+
Val
CAC
[Ensembl]
¡û
>C027217
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
1738264
1738190
-
Val
CAC
[Ensembl]
¡û
>WENV180292851
OBIV01665861
[OBIV] soil metagenome; Clay
175
101
-
Val
CAC
[ENA]
¢þ
>w001682
AAAM03000044
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
11519
11448
-
Val
CAC
[ENA]
¡û
>w001652
AAAM03000010
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
35509
35583
+
Val
CAC
[ENA]
¡û
>w001590
AAAL02000001
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
100112
100041
-
Val
CAC
[ENA]
¡û
>W141096991
AVGA01000005
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
78480
78406
-
Val
CAC
[ENA]
¡û
>W141148588
AWYH01000011
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
11975
12049
+
Val
CAC
[ENA]
¡û
>W141152281
AXBS01000011
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
11911
11985
+
Val
CAC
[ENA]
¡û
>W141153652
AXDP01000002
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
117200
117274
+
Val
CAC
[ENA]
¡û
>C08011561
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
1711068
1710997
-
Val
CAC
[Ensembl]
¡û
>C08011610
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
1753531
1753460
-
Val
CAC
[Ensembl]
¡û
>WENV183732073
PJTV01000006
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
28828
28902
+
Val
CAC
[ENA]
¢þ
>WENV183732404
PJTX01000112
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
28828
28902
+
Val
CAC
[ENA]
¢þ
>WENV183734813
PJUA01000024
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
156765
156691
-
Val
CAC
[ENA]
¢þ
>WENV170012310
APMI01150660
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1172
1098
-
Val
CAC
[ENA]
¢þ
>W141401134
JDSQ01000012
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
19775
19849
+
Val
CAC
[ENA]
¡û
>WENV170713166
LNFM01025361
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5427
5501
+
Val
CAC
[ENA]
¢þ
>C181007941
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
649094
649168
+
Val
CAC
-
¡û
>C181007989
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
642458
642532
+
Val
CAC
-
¡û
>C181008037
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
648293
648367
+
Val
CAC
-
¡û
>C181008085
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
605354
605428
+
Val
CAC
-
¡û
>C181008133
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
641798
641872
+
Val
CAC
-
¡û
>C181011023
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
964871
964945
+
Val
CAC
-
¡û
>C181020191
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
590918
590992
+
Val
CAC
-
¡û
>C181020240
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
590953
591027
+
Val
CAC
-
¡û
>C191165705
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1141193
1141119
-
Val
CAC
-
¡û
>W141699113
JMHP01000010
Gammaproteobacteria
Xylella fastidiosa [JMHP]
263686
263760
+
Val
CAC
[ENA]
¡û
>W1911582011
PHFP01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
13213
13287
+
Val
CAC
[ENA]
¡û
>W1911582065
PHFQ01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7969 [PHFQ]
78604
78530
-
Val
CAC
[ENA]
¡û
>W1911582113
PHFR01000013
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
12513
12587
+
Val
CAC
[ENA]
¡û
>W1911582130
PHFS01000001
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
80940
80866
-
Val
CAC
[ENA]
¡û
>W1911582209
PHFT01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
78605
78531
-
Val
CAC
[ENA]
¡û
>W1911582229
PHFU01000003
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
166228
166154
-
Val
CAC
[ENA]
¡û
>W1911582294
PHFV01000013
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
11375
11449
+
Val
CAC
[ENA]
¡û
>W1911710172
QPQV01000108
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
12004
12078
+
Val
CAC
[ENA]
¡û
>W1911710222
QPQW01000116
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
12004
12078
+
Val
CAC
[ENA]
¡û
>W1911726700
QTJS01000010
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
65991
65917
-
Val
CAC
[ENA]
¡û
>W1911726763
QTJT01000029
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
16402
16328
-
Val
CAC
[ENA]
¡û
>W1911752135
QWLC01000095
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
12548
12622
+
Val
CAC
[ENA]
¡û
>W1810914470
QVPD01000004
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
77160
77086
-
Val
CAC
[ENA]
¡û
>C151011012
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
2321350
2321276
-
Val
CAC
[Ensembl]
¡û
>C151011705
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
1475441
1475367
-
Val
CAC
[Ensembl]
¡û
>W1511320750
JQAP01000014
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
427209
427135
-
Val
CAC
[ENA]
¡û
>C11123993
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
345525
345451
-
Val
CAC
[Ensembl]
¡û
>W1511436635
JUJW01000001
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
598606
598680
+
Val
CAC
[ENA]
¡û
>W11158555
AFDJ01000053
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
73850
73776
-
Val
CAC
[ENA]
¡û
>W121110759
ALIP01000136
Gammaproteobacteria
Pseudoxanthomonas sp. GW2 [ALIP]
18951
18877
-
Val
CAC
[ENA]
¡û
>W1610521509
JNBT01000005
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
14154
14228
+
Val
CAC
[ENA]
¡û
>W1610586825
LDJH01000016
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
17850
17924
+
Val
CAC
[ENA]
¡û
>W1610587089
LDJM01000006
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
71125
71199
+
Val
CAC
[ENA]
¡û
>W1610669115
LJZW01000012
Gammaproteobacteria
Xylella fastidiosa [LJZW]
167963
167889
-
Val
CAC
[ENA]
¡û
>W1610672178
LKDK01000011
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
75452
75378
-
Val
CAC
[ENA]
¡û
>W1610673741
LKES01000009
Gammaproteobacteria
Xylella fastidiosa [LKES]
11343
11417
+
Val
CAC
[ENA]
¡û
>W1610896801
LRVE01000015
Gammaproteobacteria
Xylella fastidiosa [LRVE]
116221
116295
+
Val
CAC
[ENA]
¡û
>W1610896864
LRVF01000075
Gammaproteobacteria
Xylella fastidiosa [LRVF]
19405
19331
-
Val
CAC
[ENA]
¡û
>W1610896907
LRVG01000055
Gammaproteobacteria
Xylella fastidiosa [LRVG]
11729
11803
+
Val
CAC
[ENA]
¡û
>W1610896966
LRVH01000163
Gammaproteobacteria
Xylella fastidiosa [LRVH]
16356
16282
-
Val
CAC
[ENA]
¡û
>W1610896981
LRVI01000007
Gammaproteobacteria
Xylella fastidiosa [LRVI]
312162
312236
+
Val
CAC
[ENA]
¡û
>W1610897070
LRVJ01000163
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
33207
33281
+
Val
CAC
[ENA]
¡û
>W1610917034
LSMJ01000009
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
286272
286198
-
Val
CAC
[ENA]
¡û
>W1710585680
FQWN01000012
Gammaproteobacteria
Xylella fastidiosa [FQWN]
78418
78344
-
Val
CAC
[ENA]
¡û
>W1710620794
JNBT01000005
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
14154
14228
+
Val
CAC
[ENA]
¡û
>W1710705955
LDJH01000016
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
17850
17924
+
Val
CAC
[ENA]
¡û
>W1710706219
LDJM01000006
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
71125
71199
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK