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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400119 (31 seq.)
>C025762
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
598838
598767
-
Cys
GCA
[Ensembl]
¡û
>WENV180371135
OBOI01000461
[OBOI] sediment metagenome; sediment
4907
4981
+
Cys
GCA
[ENA]
¢þ
>W141055926
AOTN01000025
Spirochaetota
Treponema pedis str. B 683 [AOTN]
8247
8176
-
Cys
GCA
[ENA]
¡û
>W141056021
AOTP01000083
Spirochaetota
Treponema pedis isoE1186 [AOTP]
5534
5605
+
Cys
GCA
[ENA]
¡û
>W141064694
AQCF01000035
Spirochaetota
Treponema phagedenis 4A [AQCF]
378054
378125
+
Cys
GCA
[ENA]
¡û
>WENV180951265
ODUH01014700
[ODUH] human metagenome; G_DNA_Subgingival plaque
12
83
+
Cys
GCA
[ENA]
¢þ
>WENV170643348
JFJP01053774
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
566
492
-
Cys
GCA
[ENA]
¢þ
>C191179261
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
600613
600542
-
Cys
GCA
-
¡û
>C151004510
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
600017
599946
-
Cys
GCA
[Ensembl]
¡û
>C10113611
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
600078
600007
-
Cys
GCA
[Ensembl]
¡û
>C10113655
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
600288
600217
-
Cys
GCA
[Ensembl]
¡û
>C11122921
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
596337
596266
-
Cys
GCA
[Ensembl]
¡û
>C121002429
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
600415
600344
-
Cys
GCA
[Ensembl]
¡û
>C121002474
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
600869
600798
-
Cys
GCA
[Ensembl]
¡û
>C121002519
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
600903
600832
-
Cys
GCA
[Ensembl]
¡û
>C121006124
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
600771
600700
-
Cys
GCA
[Ensembl]
¡û
>C161017282
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
598416
598345
-
Cys
GCA
[Ensembl]
¡û
>C161028047
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
600304
600233
-
Cys
GCA
-
¡û
>C161028091
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
600470
600399
-
Cys
GCA
-
¡û
>C161028135
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
599220
599149
-
Cys
GCA
-
¡û
>C161028179
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
600481
600410
-
Cys
GCA
-
¡û
>C161028223
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
600344
600273
-
Cys
GCA
-
¡û
>C161028267
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
600563
600492
-
Cys
GCA
-
¡û
>C161028312
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
600805
600734
-
Cys
GCA
-
¡û
>C161028356
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
600610
600539
-
Cys
GCA
-
¡û
>C161028400
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
600549
600478
-
Cys
GCA
-
¡û
>C161084213
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
463928
463857
-
Cys
GCA
-
¡û
>C131001886
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
600808
600737
-
Cys
GCA
[Ensembl]
¡û
>C131009517
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
601136
601065
-
Cys
GCA
[Ensembl]
¡û
>C131011378
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
600429
600358
-
Cys
GCA
-
¡û
>C131011422
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
600312
600241
-
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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