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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400146 (24 seq.)
>W1711092356
LTEA01000101
Bacillota
Pediococcus damnosus [LTEA]
1459
1532
+
Arg
CCG
[ENA]
¡û
>W1711218616
LXND01000096
Bacillota
Pediococcus parvulus [LXND]
7419
7492
+
Arg
CCG
[ENA]
¡û
>W141236506
BBIM01000015
Bacillota
Pediococcus inopinatus [BBIM]
18890
18817
-
Arg
CCG
[ENA]
¡û
>WENV183218235
OLQI01043775
[OLQI] human gut metagenome; faeces
411
338
-
Arg
CCG
[ENA]
¢þ
>C181042080
CP019981
Bacillota
Pediococcus inopinatus DSM 20285 [CP019981]
1361367
1361440
+
Arg
CCG
-
¡û
>W1910181208
BJLT01000052
Bacillota
Pediococcus damnosus NBRC 3889 [BJLT]
11859
11786
-
Arg
CCG
[ENA]
¡û
>W1910792186
MRAF01000001
Bacillota
Pediococcus damnosus P58 [MRAF]
1378387
1378314
-
Arg
CCG
[ENA]
¡û
>W1910841648
NAEQ01000002
Bacillota
Pediococcus damnosus VTT E-123216 [NAEQ]
799380
799453
+
Arg
CCG
[ENA]
¡û
>W1910841738
NAER01000002
Bacillota
Pediococcus damnosus VTT E-123212 [NAER]
1328499
1328426
-
Arg
CCG
[ENA]
¡û
>W1510765723
JANK01000054
Bacillota
Pediococcus damnosus LMG 28219 [JANK]
22300
22373
+
Arg
CCG
[ENA]
¡û
>C161040650
CP012269
Bacillota
Pediococcus damnosus TMW 2.1532 [CP012269]
282282
282355
+
Arg
CCG
-
¡û
>C161040726
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
861707
861780
+
Arg
CCG
-
¡û
>C161040769
CP012283
Bacillota
Pediococcus damnosus TMW 2.1534 [CP012283]
278958
279031
+
Arg
CCG
-
¡û
>C161040861
CP012288
Bacillota
Pediococcus damnosus TMW 2.1535 [CP012288]
1602869
1602796
-
Arg
CCG
[Ensembl]
¡û
>C161040890
CP012294
Bacillota
Pediococcus damnosus TMW 2.1536 [CP012294]
726067
726140
+
Arg
CCG
-
¡û
>W1610528294
JQBC01000006
Bacillota
Pediococcus inopinatus [JQBC]
58396
58323
-
Arg
CCG
[ENA]
¡û
>W1610528330
JQBD01000011
Bacillota
Pediococcus damnosus [JQBD]
4209
4136
-
Arg
CCG
[ENA]
¡û
>W1610529273
JQBY01000013
Bacillota
Pediococcus ethanolidurans [JQBY]
46483
46556
+
Arg
CCG
[ENA]
¡û
>W1610926394
LTEA01000101
Bacillota
Pediococcus damnosus [LTEA]
1459
1532
+
Arg
CCG
[ENA]
¡û
>W1611003432
LXND01000096
Bacillota
Pediococcus parvulus [LXND]
7419
7492
+
Arg
CCG
[ENA]
¡û
>W1710551870
FOGK01000012
Bacillota
Pediococcus ethanolidurans [FOGK]
23911
23838
-
Arg
CCG
[ENA]
¡û
>W1710629884
JQBC01000006
Bacillota
Pediococcus inopinatus [JQBC]
58396
58323
-
Arg
CCG
[ENA]
¡û
>W1710629920
JQBD01000011
Bacillota
Pediococcus damnosus [JQBD]
4209
4136
-
Arg
CCG
[ENA]
¡û
>W1710630863
JQBY01000013
Bacillota
Pediococcus ethanolidurans [JQBY]
46483
46556
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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