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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400162 (125 seq.)
>W1710890903
LNCE01000031
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
129826
129900
+
Thr
GGT
[ENA]
¡û
>W1710890939
LNCE01000132
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
1371
1445
+
Thr
GGT
[ENA]
¡û
>W1710924019
LOCQ01000053
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
77183
77257
+
Thr
GGT
[ENA]
¡û
>W1710924043
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
311459
311385
-
Thr
GGT
[ENA]
¡û
>W1711033421
LRHW01000079
Betaproteobacteria
Janthinobacterium lividum [LRHW]
267553
267627
+
Thr
GGT
[ENA]
¡û
>W1711033423
LRHW01000079
Betaproteobacteria
Janthinobacterium lividum [LRHW]
34731
34657
-
Thr
GGT
[ENA]
¡û
>W1711033456
LRHX01000007
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
313407
313481
+
Thr
GGT
[ENA]
¡û
>W1711033458
LRHX01000007
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
79359
79285
-
Thr
GGT
[ENA]
¡û
>W1711033528
LRHY01000083
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
77185
77111
-
Thr
GGT
[ENA]
¡û
>W1711033534
LRHY01000107
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
215
141
-
Thr
GGT
[ENA]
¡û
>W1711033581
LRHZ01000009
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
77257
77183
-
Thr
GGT
[ENA]
¡û
>W1711033606
LRHZ01000025
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
69828
69902
+
Thr
GGT
[ENA]
¡û
>W1711033636
LRIA01000032
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
77185
77111
-
Thr
GGT
[ENA]
¡û
>W1711033649
LRIA01000063
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
215
141
-
Thr
GGT
[ENA]
¡û
>W1711033709
LRIB01000033
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
210621
210547
-
Thr
GGT
[ENA]
¡û
>W1711033755
LRIC01000012
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
1
75
+
Thr
GGT
[ENA]
¡û
>W1711033804
LRID01000038
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
18743
18817
+
Thr
GGT
[ENA]
¡û
>W1711033835
LRID01000097
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
212739
212813
+
Thr
GGT
[ENA]
¡û
>W1711308590
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
1839002
1838928
-
Thr
GGT
[ENA]
¡û
>W1711308598
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
1541430
1541356
-
Thr
GGT
[ENA]
¡û
>W131106721
APFF01000033
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
517354
517428
+
Thr
GGT
[ENA]
¡û
>W131106726
APFF01000033
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
290273
290199
-
Thr
GGT
[ENA]
¡û
>W1712004432
NEGX01000005
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
80613
80687
+
Thr
GGT
[ENA]
¡û
>W1712004478
NEGX01000041
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
52281
52355
+
Thr
GGT
[ENA]
¡û
>W1712004496
NEGY01000002
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
80646
80720
+
Thr
GGT
[ENA]
¡û
>W1712004531
NEGY01000012
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
65587
65513
-
Thr
GGT
[ENA]
¡û
>W1712004586
NEGZ01000003
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
152935
152861
-
Thr
GGT
[ENA]
¡û
>W1712004632
NEGZ01000039
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
53196
53270
+
Thr
GGT
[ENA]
¡û
>W1712004657
NEHA01000003
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
80553
80627
+
Thr
GGT
[ENA]
¡û
>W1712004706
NEHA01000045
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
52292
52366
+
Thr
GGT
[ENA]
¡û
>W1712004747
NEHB01000004
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
80669
80743
+
Thr
GGT
[ENA]
¡û
>W1712004768
NEHB01000010
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
221634
221560
-
Thr
GGT
[ENA]
¡û
>C171010496
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
6044688
6044762
+
Thr
GGT
-
¡û
>C171010509
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
5818248
5818174
-
Thr
GGT
-
¡û
>C171094960
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
663754
663828
+
Thr
GGT
-
¡û
>C171095035
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
416503
416429
-
Thr
GGT
-
¡û
>WENV180022307
FTFY01000301
[FTFY] metagenome; soil
388
314
-
Thr
GGT
[ENA]
¢þ
>WENV180026558
FTIU01002631
[FTIU] metagenome; soil
268
342
+
Thr
GGT
[ENA]
¢þ
>WENV180029950
FTJL01031001
[FTJL] metagenome; soil
345
271
-
Thr
GGT
[ENA]
¢þ
>WENV180250721
OBEQ010307222
[OBEQ] groundwater metagenome; groundwater
388
314
-
Thr
GGT
[ENA]
¢þ
>WENV180304370
OBJI01013644
[OBJI] soil metagenome; soil
19
93
+
Thr
GGT
[ENA]
¢þ
>WENV182885892
OKSC01039580
[OKSC] human gut metagenome; faeces
110
36
-
Thr
GGT
[ENA]
¢þ
>WENV170155112
CEOF01433624
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1356
1282
-
Thr
GGT
[ENA]
¢þ
>WENV170639399
JFJP01002384
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
294
220
-
Thr
GGT
[ENA]
¢þ
>W141484453
JFYR01000012
Betaproteobacteria
Janthinobacterium lividum [JFYR]
447104
447178
+
Thr
GGT
[ENA]
¡û
>W141484459
JFYR01000012
Betaproteobacteria
Janthinobacterium lividum [JFYR]
211083
211009
-
Thr
GGT
[ENA]
¡û
>C181081097
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
688548
688622
+
Thr
GGT
-
¡û
>C181081173
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
445502
445428
-
Thr
GGT
-
¡û
>C191098135
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
6278069
6278143
+
Thr
GGT
-
¡û
>C191098138
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
6044431
6044357
-
Thr
GGT
-
¡û
>C191188140
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
4547458
4547532
+
Thr
GGT
-
¡û
>C191188175
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
4322205
4322131
-
Thr
GGT
-
¡û
>W141821512
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
4691215
4691289
+
Thr
GGT
[ENA]
¡û
>W141821545
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
4419249
4419175
-
Thr
GGT
[ENA]
¡û
>W1910942536
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
2900869
2900943
+
Thr
GGT
[ENA]
¡û
>W1910942543
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
2611514
2611440
-
Thr
GGT
[ENA]
¡û
>W1911199838
NRDQ01000010
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
111295
111369
+
Thr
GGT
[ENA]
¡û
>W1911199898
NRDQ01000133
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
40581
40655
+
Thr
GGT
[ENA]
¡û
>W1911572364
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
2804790
2804864
+
Thr
GGT
[ENA]
¡û
>W1810068159
PDZI01000004
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
432209
432283
+
Thr
GGT
[ENA]
¡û
>W1810068161
PDZI01000004
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
200419
200345
-
Thr
GGT
[ENA]
¡û
>W1810068279
PDZJ01000004
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
446493
446567
+
Thr
GGT
[ENA]
¡û
>W1810068281
PDZJ01000004
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
207397
207323
-
Thr
GGT
[ENA]
¡û
>W1810068358
PDZK01000004
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
233482
233556
+
Thr
GGT
[ENA]
¡û
>W1810068363
PDZK01000004
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
287
213
-
Thr
GGT
[ENA]
¡û
>W1810068391
PDZL01000004
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
457724
457798
+
Thr
GGT
[ENA]
¡û
>W1810068393
PDZL01000004
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
225979
225905
-
Thr
GGT
[ENA]
¡û
>W1810068480
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
271873
271947
+
Thr
GGT
[ENA]
¡û
>W1810068486
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
37161
37087
-
Thr
GGT
[ENA]
¡û
>W1810068538
PDZN01000001
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
244898
244972
+
Thr
GGT
[ENA]
¡û
>W1810068543
PDZN01000001
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
14268
14194
-
Thr
GGT
[ENA]
¡û
>W1810068643
PDZO02000007
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
119433
119507
+
Thr
GGT
[ENA]
¡û
>W1810068672
PDZO02000019
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
112626
112700
+
Thr
GGT
[ENA]
¡û
>W1810069754
PEBS01000019
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
60064
60138
+
Thr
GGT
[ENA]
¡û
>W1810069790
PEBS01000086
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
21908
21982
+
Thr
GGT
[ENA]
¡û
>W1810071272
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2944371
2944445
+
Thr
GGT
[ENA]
¡û
>W1810071316
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2716748
2716674
-
Thr
GGT
[ENA]
¡û
>W1810072765
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
2497270
2497344
+
Thr
GGT
[ENA]
¡û
>W1810072813
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
2261476
2261402
-
Thr
GGT
[ENA]
¡û
>W1810089387
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
4510862
4510936
+
Thr
GGT
[ENA]
¡û
>W1810089412
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
4267033
4266959
-
Thr
GGT
[ENA]
¡û
>W1810121264
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
4117993
4118067
+
Thr
GGT
[ENA]
¡û
>W1810121304
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
3880726
3880652
-
Thr
GGT
[ENA]
¡û
>W1810172808
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
4753569
4753643
+
Thr
GGT
[ENA]
¡û
>W1810172824
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
4527186
4527112
-
Thr
GGT
[ENA]
¡û
>W1810400026
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
900360
900286
-
Thr
GGT
[ENA]
¡û
>W1810576758
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
704227
704301
+
Thr
GGT
[ENA]
¡û
>W1810576832
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
461897
461823
-
Thr
GGT
[ENA]
¡û
>C151062580
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
457880
457954
+
Thr
GGT
[Ensembl]
¡û
>C11105055
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
485966
486040
+
Thr
GGT
[Ensembl]
¡û
>W1511355696
JRRH01000025
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
243902
243976
+
Thr
GGT
[ENA]
¡û
>W1511355700
JRRH01000025
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
242
168
-
Thr
GGT
[ENA]
¡û
>W1511588737
LBCO01000004
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
479474
479548
+
Thr
GGT
[ENA]
¡û
>W1511588739
LBCO01000004
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
215927
215853
-
Thr
GGT
[ENA]
¡û
>C161053576
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
689428
689502
+
Thr
GGT
[Ensembl]
¡û
>C161053624
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
303674
303748
+
Thr
GGT
-
¡û
>C161053671
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
487298
487372
+
Thr
GGT
[Ensembl]
¡û
>C161053719
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
303704
303778
+
Thr
GGT
[Ensembl]
¡û
>C161053769
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
415361
415435
+
Thr
GGT
[Ensembl]
¡û
>W121031788
AHHB01000011
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
88128
88202
+
Thr
GGT
[ENA]
¡û
>W121031794
AHHB01000014
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
128560
128634
+
Thr
GGT
[ENA]
¡û
>W1610751299
LNCE01000031
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
129826
129900
+
Thr
GGT
[ENA]
¡û
>W1610751335
LNCE01000132
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
1371
1445
+
Thr
GGT
[ENA]
¡û
>W1610781665
LOCQ01000053
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
77183
77257
+
Thr
GGT
[ENA]
¡û
>W1610781689
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
311459
311385
-
Thr
GGT
[ENA]
¡û
>W1611056265
MAQB01000056
Betaproteobacteria
Janthinobacterium lividum [MAQB]
237867
237793
-
Thr
GGT
[ENA]
¡û
>W1611056288
MAQB01000067
Betaproteobacteria
Janthinobacterium lividum [MAQB]
290541
290467
-
Thr
GGT
[ENA]
¡û
>W1710509349
FMXD01000004
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
237050
237124
+
Thr
GGT
[ENA]
¡û
>W1710509354
FMXD01000004
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
520
446
-
Thr
GGT
[ENA]
¡û
>W1710517041
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
603678
603752
+
Thr
GGT
[ENA]
¡û
>W1710517046
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
363988
363914
-
Thr
GGT
[ENA]
¡û
>W1710522204
FNHA01000005
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
393443
393517
+
Thr
GGT
[ENA]
¡û
>W1710522206
FNHA01000005
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
137532
137458
-
Thr
GGT
[ENA]
¡û
>W1710530387
FNOR01000035
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
451
377
-
Thr
GGT
[ENA]
¡û
>W1710556473
FOKF01000070
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
384
310
-
Thr
GGT
[ENA]
¡û
>W1710556749
FOKL01000006
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
237158
237232
+
Thr
GGT
[ENA]
¡û
>W1710556754
FOKL01000006
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
544
470
-
Thr
GGT
[ENA]
¡û
>W1710557528
FOLC01000004
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
15848
15922
+
Thr
GGT
[ENA]
¡û
>W1710564239
FOQI01000020
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
84445
84519
+
Thr
GGT
[ENA]
¡û
>W1710581725
FPKH01000006
Betaproteobacteria
Janthinobacterium lividum [FPKH]
236950
237024
+
Thr
GGT
[ENA]
¡û
>W1710581730
FPKH01000006
Betaproteobacteria
Janthinobacterium lividum [FPKH]
472
398
-
Thr
GGT
[ENA]
¡û
>W1710596834
FTMV01000001
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
433380
433454
+
Thr
GGT
[ENA]
¡û
>W1710596840
FTMV01000001
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
203126
203052
-
Thr
GGT
[ENA]
¡û
>W1710720669
LFKP01000014
Betaproteobacteria
Janthinobacterium lividum [LFKP]
565436
565510
+
Thr
GGT
[ENA]
¡û
>W1710720674
LFKP01000014
Betaproteobacteria
Janthinobacterium lividum [LFKP]
335286
335212
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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