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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400172 (22 seq.)
>W1711170188
LWAF01000001
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
107070
106996
-
Arg
CCT
[ENA]
¡û
>C171002401
CP009471
Thermotogota
Marinitoga sp. 1137 [CP009471]
1643744
1643818
+
Arg
CCT
-
¡û
>w019760
AAUK01000035
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
13502
13431
-
Arg
CCT
[ENA]
¡û
>WENV180014056
FPIC01038718
[FPIC] soil metagenome; Soil
22317
22391
+
Arg
CCT
[ENA]
¢þ
>WENV180014388
FQKF010002080
[FQKF] soil metagenome; Soil
28290
28364
+
Arg
CCT
[ENA]
¢þ
>WENV180095107
MTBK01049193
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
845
919
+
Arg
CCT
[ENA]
¢þ
>WENV181226206
OFDK01000204
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15585
15511
-
Arg
CCT
[ENA]
¢þ
>WENV181285335
OFGS01000004
[OFGS] hot springs metagenome; Water and soil
32281
32355
+
Arg
CCT
[ENA]
¢þ
>C08004973
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
723873
723947
+
Arg
CCT
[Ensembl]
¡û
>W1511355422
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
756153
756227
+
Arg
CCT
[ENA]
¡û
>C121009780
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
1584183
1584257
+
Arg
CCT
[Ensembl]
¡û
>C121009918
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
257102
257028
-
Arg
CCT
[Ensembl]
¡û
>C161034963
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
224132
224206
+
Arg
CCT
[Ensembl]
¡û
>C161071304
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
321989
321915
-
Arg
CCT
[Ensembl]
¡û
>W1610032642
AZAX01000009
Thermotogota
Marinitoga sp. 1155 [AZAX]
25155
25081
-
Arg
CCT
[ENA]
¡û
>W1610032692
AZAY01000021
Thermotogota
Marinitoga sp. 1197 [AZAY]
24694
24620
-
Arg
CCT
[ENA]
¡û
>W121010846
AGJO01000005
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
22090
22164
+
Arg
CCT
[ENA]
¡û
>W1710029387
AZAX01000009
Thermotogota
Marinitoga sp. 1155 [AZAX]
25155
25081
-
Arg
CCT
[ENA]
¡û
>W1710029437
AZAY01000021
Thermotogota
Marinitoga sp. 1197 [AZAY]
24694
24620
-
Arg
CCT
[ENA]
¡û
>W1710517615
FNDL01000029
Thermotogota
Fervidobacterium changbaicum [FNDL]
21308
21382
+
Arg
CCT
[ENA]
¡û
>W1710582893
FQUI01000030
Thermotogota
Marinitoga hydrogenitolerans DSM 16785 [FQUI]
25902
25828
-
Arg
CCT
[ENA]
¡û
>W1710593336
FRDJ01000002
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
126244
126170
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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