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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400180 (79 seq.)
>W1710853491
LLWT01000085
Gammaproteobacteria
Klebsiella pneumoniae [LLWT]
245776
245704
-
Arg
CCT
[ENA]
¡û
>W1710853585
LLWU01000173
Gammaproteobacteria
Klebsiella pneumoniae [LLWU]
68266
68338
+
Arg
CCT
[ENA]
¡û
>W1710853618
LLWV01000014
Gammaproteobacteria
Klebsiella pneumoniae [LLWV]
75531
75459
-
Arg
CCT
[ENA]
¡û
>W1710853762
LLWW01000109
Gammaproteobacteria
Klebsiella pneumoniae [LLWW]
245776
245704
-
Arg
CCT
[ENA]
¡û
>W1710853818
LLWX01000046
Gammaproteobacteria
Klebsiella pneumoniae [LLWX]
198738
198666
-
Arg
CCT
[ENA]
¡û
>W1710853932
LLWY01000083
Gammaproteobacteria
Klebsiella pneumoniae [LLWY]
156077
156149
+
Arg
CCT
[ENA]
¡û
>W1710854017
LLWZ01000084
Gammaproteobacteria
Klebsiella pneumoniae [LLWZ]
198738
198666
-
Arg
CCT
[ENA]
¡û
>W1710854075
LLXA01000084
Gammaproteobacteria
Klebsiella pneumoniae [LLXA]
198733
198661
-
Arg
CCT
[ENA]
¡û
>W1710854163
LLXB01000120
Gammaproteobacteria
Klebsiella pneumoniae [LLXB]
245776
245704
-
Arg
CCT
[ENA]
¡û
>W1710934053
LOJA01000085
Gammaproteobacteria
Escherichia coli [LOJA]
39543
39469
-
Arg
CCT
[ENA]
¡û
>W1711026339
LRCP01000023
Gammaproteobacteria
Enterobacter kobei [LRCP]
49960
50032
+
Arg
CCT
[ENA]
¡û
>W1711619947
MPCE01000003
Gammaproteobacteria
Klebsiella pneumoniae [MPCE]
650475
650547
+
Arg
CCT
[ENA]
¡û
>W1711738799
MUBJ01000018
Gammaproteobacteria
Xenorhabdus vietnamensis [MUBJ]
80253
80327
+
Arg
CCT
[ENA]
¡û
>W1711818838
MXLG01000001
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 48:g [MXLG]
225041
224967
-
Arg
CCT
[ENA]
¡û
>W1711824884
MXOP01000001
Gammaproteobacteria
Salmonella enterica [MXOP]
498542
498616
+
Arg
CCT
[ENA]
¡û
>W1711886881
MYXX01000005
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 50:g [MYXX]
130866
130792
-
Arg
CCT
[ENA]
¡û
>W1711887346
MYYD01000010
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 44:z4 [MYYD]
141606
141680
+
Arg
CCT
[ENA]
¡û
>W1711887938
MYYL01000009
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 44:z4 [MYYL]
141600
141674
+
Arg
CCT
[ENA]
¡û
>W1711888399
MYYR01000006
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 50:g [MYYR]
36971
36897
-
Arg
CCT
[ENA]
¡û
>W1711888717
MYYV01000011
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 44:z4 [MYYV]
36972
36898
-
Arg
CCT
[ENA]
¡û
>W1711889138
MYZB01000011
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 44:z4 [MYZB]
141602
141676
+
Arg
CCT
[ENA]
¡û
>W1711889341
MYZE01000003
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 50:g [MYZE]
141603
141677
+
Arg
CCT
[ENA]
¡û
>W1711889934
MYZM01000011
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 48:g [MYZM]
46953
47027
+
Arg
CCT
[ENA]
¡û
>W1711890820
MYZY01000010
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 48:g [MYZY]
141600
141674
+
Arg
CCT
[ENA]
¡û
>W1711891711
MZAK01000013
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 48:g [MZAK]
36880
36806
-
Arg
CCT
[ENA]
¡û
>W1711891957
MZAO01000001
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 48:g [MZAO]
494665
494739
+
Arg
CCT
[ENA]
¡û
>W1711892940
MZBB01000010
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 48:g [MZBB]
29450
29376
-
Arg
CCT
[ENA]
¡û
>W1711897552
MZDN01000001
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 44:z4 [MZDN]
36864
36790
-
Arg
CCT
[ENA]
¡û
>W1711898535
MZEA01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar 4 [MZEA]
194733
194807
+
Arg
CCT
[ENA]
¡û
>W1712054866
NFXZ01000065
Gammaproteobacteria
Klebsiella pneumoniae [NFXZ]
2104
2032
-
Arg
CCT
[ENA]
¡û
>W1712054922
NFYA01000061
Gammaproteobacteria
Klebsiella pneumoniae [NFYA]
2104
2032
-
Arg
CCT
[ENA]
¡û
>W1712055539
NFYK01000060
Gammaproteobacteria
Klebsiella pneumoniae [NFYK]
56935
56863
-
Arg
CCT
[ENA]
¡û
>C171065742
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
2965642
2965716
+
Arg
CCT
-
¡û
>C171126955
CP021960
Gammaproteobacteria
Klebsiella pneumoniae AR_0139 [CP021960]
35378
35450
+
Arg
CCT
-
¡û
>WENV180407676
OBUR01000086
[OBUR] human gut metagenome; faeces
50085
50013
-
Arg
CCT
[ENA]
¢þ
>WENV180466816
OBYG01011726
[OBYG] human gut metagenome; faeces
78
149
+
Arg
CCT
[ENA]
¢þ
>W141056782
AOXJ01000049
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 50:g [AOXJ]
141823
141897
+
Arg
CCT
[ENA]
¡û
>WENV181502158
OGGI01006336
[OGGI] metagenome; Human gut stool
158
84
-
Arg
CCT
[ENA]
¢þ
>WENV182400440
OIEQ01000202
[OIEQ] human gut metagenome; human gut
18246
18174
-
Arg
CCT
[ENA]
¢þ
>W141254307
CBSY010000018
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Quebec [CBSY]
526
452
-
Arg
CCT
[ENA]
¡û
>WENV182847004
OKJV01000005
[OKJV] human gut metagenome; human gut
254849
254920
+
Arg
CCT
[ENA]
¢þ
>WENV182947758
OKVN01000049
[OKVN] human gut metagenome; human gut
32843
32771
-
Arg
CCT
[ENA]
¢þ
>WENV170656465
JTFO01017852
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
674
600
-
Arg
CCT
[ENA]
¢þ
>C181097974
CP024243
Gammaproteobacteria
Escherichia coli O128:H27 90-9281 [CP024243]
3653183
3653109
-
Arg
CCT
-
¡û
>C181152639
CP027418
Gammaproteobacteria
Providencia rettgeri FDAARGOS_330 [CP027418]
4246924
4246998
+
Arg
CCT
-
¡û
>C191050737
CP027109
Gammaproteobacteria
Cronobacter sakazakii CS-09 [CP027109]
2762088
2762159
+
Arg
CCT
-
¡û
>W1910178356
BJEX01000014
Gammaproteobacteria
Enterobacter kobei Dec-42 [BJEX]
50176
50104
-
Arg
CCT
[ENA]
¡û
>W1910453287
FWKX01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0213 [FWKX]
238809
238735
-
Arg
CCT
[ENA]
¡û
>W1910454138
FWLI01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0290 [FWLI]
885431
885505
+
Arg
CCT
[ENA]
¡û
>W1910454522
FWLN01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0292 [FWLN]
580128
580202
+
Arg
CCT
[ENA]
¡û
>W1910457242
FWMW01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0390 [FWMW]
580273
580347
+
Arg
CCT
[ENA]
¡û
>W1910457471
FWMZ01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0389 [FWMZ]
577897
577971
+
Arg
CCT
[ENA]
¡û
>W1910457552
FWNA01000003
Gammaproteobacteria
Klebsiella pneumoniae VRCO0391 [FWNA]
570440
570514
+
Arg
CCT
[ENA]
¡û
>W1910457625
FWNB01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0388 [FWNB]
570592
570666
+
Arg
CCT
[ENA]
¡û
>W1910458481
FWNM01000003
Gammaproteobacteria
Klebsiella pneumoniae VRCO0196 [FWNM]
323803
323877
+
Arg
CCT
[ENA]
¡û
>W1910458791
FWNQ01000003
Gammaproteobacteria
Klebsiella pneumoniae VRCO0195 [FWNQ]
238809
238735
-
Arg
CCT
[ENA]
¡û
>W1910461176
FWOV01000003
Gammaproteobacteria
Klebsiella pneumoniae VRCO0291 [FWOV]
397911
397985
+
Arg
CCT
[ENA]
¡û
>W1910461896
FWPF01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0293 [FWPF]
570190
570264
+
Arg
CCT
[ENA]
¡û
>W1910462006
FWPG01000003
Gammaproteobacteria
Klebsiella pneumoniae VRCO0392 [FWPG]
398133
398207
+
Arg
CCT
[ENA]
¡û
>W1910491607
FXQF01000004
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 3189STDY5864788 [FXQF]
245685
245613
-
Arg
CCT
[ENA]
¡û
>W1910492164
FXQN01000003
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 3189STDY5864789 [FXQN]
245856
245784
-
Arg
CCT
[ENA]
¡û
>W1910492831
FXQW01000003
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 3189STDY5864796 [FXQW]
154942
155014
+
Arg
CCT
[ENA]
¡û
>W1511394035
JTAX01000002
Gammaproteobacteria
Klebsiella pneumoniae FDAARGOS_84 [JTAX]
202904
202976
+
Arg
CCT
[ENA]
¡û
>W1511448128
JUZK01000015
Gammaproteobacteria
Enterobacter kobei 63_ECLO [JUZK]
50059
49987
-
Arg
CCT
[ENA]
¡û
>W1511448777
JVAE01000040
Gammaproteobacteria
Enterobacter kobei 61_ECLO [JVAE]
53162
53234
+
Arg
CCT
[ENA]
¡û
>W1511457157
JVIB01000011
Gammaproteobacteria
Enterobacter cloacae 414_ECLO [JVIB]
25501
25430
-
Arg
CCT
[ENA]
¡û
>W1511457659
JVIL01000081
Gammaproteobacteria
Enterobacter cloacae 405_ECLO [JVIL]
25501
25430
-
Arg
CCT
[ENA]
¡û
>W1511488788
JWSP01000006
Gammaproteobacteria
Salmonella enterica subsp. houtenae 01-0133 [JWSP]
228937
229011
+
Arg
CCT
[ENA]
¡û
>W1511555979
JZXR01000014
Gammaproteobacteria
Enterobacter kobei 44593 [JZXR]
51924
51996
+
Arg
CCT
[ENA]
¡û
>W1511556519
JZXZ01000027
Gammaproteobacteria
Enterobacter chengduensis 44246 [JZXZ]
29107
29036
-
Arg
CCT
[ENA]
¡û
>W1511556568
JZYA01000013
Gammaproteobacteria
Enterobacter chengduensis 44242 [JZYA]
29107
29036
-
Arg
CCT
[ENA]
¡û
>W1511657923
LESM01000001
Gammaproteobacteria
Citrobacter sp. MGH100 [LESM]
240338
240264
-
Arg
CCT
[ENA]
¡û
>C161048983
CP012987
Gammaproteobacteria
Klebsiella pneumoniae KpN01 [CP012987]
4255211
4255139
-
Arg
CCT
-
¡û
>C161049071
CP012992
Gammaproteobacteria
Klebsiella pneumoniae KpN06 [CP012992]
4247938
4247866
-
Arg
CCT
-
¡û
>C161084991
CP015227
Gammaproteobacteria
Enterobacter sp. ODB01 [CP015227]
4298027
4298099
+
Arg
CCT
-
¡û
>W121017031
AGRM01000001
Gammaproteobacteria
Salmonella enterica subsp. houtenae str. ATCC BAA-1581 [AGRM]
2505197
2505271
+
Arg
CCT
[ENA]
¡û
>W1610508592
FLVI01000021
Gammaproteobacteria
Klebsiella pneumoniae PB173 [FLVI]
31069
31141
+
Arg
CCT
[ENA]
¡û
>W1610791584
LOJA01000085
Gammaproteobacteria
Escherichia coli [LOJA]
39543
39469
-
Arg
CCT
[ENA]
¡û
>W1610874451
LRCP01000023
Gammaproteobacteria
Enterobacter kobei [LRCP]
49960
50032
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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