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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400190 (71 seq.)
>W1710785362
LJHU01000031
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
4642
4568
-
Val
CAC
[ENA]
¡û
>W1710873849
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
239935
240009
+
Val
CAC
[ENA]
¡û
>W1710876110
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
123646
123720
+
Val
CAC
[ENA]
¡û
>W131221575
AUAO01000007
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
26610
26684
+
Val
CAC
[ENA]
¡û
>W1711718100
MTHE01000003
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
61291
61365
+
Val
CAC
[ENA]
¡û
>W1712106196
NIVP01000021
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
3890
3816
-
Val
CAC
[ENA]
¡û
>W131052433
AMYY01000011
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
4338
4264
-
Val
CAC
[ENA]
¡û
>W131218239
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
337385
337459
+
Val
CAC
[ENA]
¡û
>WENV180014098
FPIC01055374
[FPIC] soil metagenome; Soil
5
76
+
Val
CAC
[ENA]
¢þ
>WENV180017086
FSWM01000235
[FSWM] metagenome; soil
4112
4186
+
Val
GAC
[ENA]
¢þ
>WENV180017125
FSWM01000693
[FSWM] metagenome; soil
14816
14742
-
Val
CAC
[ENA]
¢þ
>WENV180017128
FSWM01000774
[FSWM] metagenome; soil
1342
1416
+
Val
CAC
[ENA]
¢þ
>WENV180025932
FTIR01000328
[FTIR] metagenome; soil
18548
18474
-
Val
CAC
[ENA]
¢þ
>WENV180031976
FTJU01002280
[FTJU] metagenome; soil
32735
32661
-
Val
CAC
[ENA]
¢þ
>W141043012
AMFA01000097
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
3118
3192
+
Val
CAC
[ENA]
¡û
>W141043029
AMFA01000151
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
78960
78886
-
Val
CAC
[ENA]
¡û
>WENV180693849
OCZS011668568
[OCZS] soil metagenome; soil
109
183
+
Val
CAC
[ENA]
¢þ
>WENV181189924
OEOF01329171
[OEOF] activated sludge metagenome; Activated Sludge
133
207
+
Val
CAC
[ENA]
¢þ
>WENV181371059
OFQU01014613
[OFQU] wastewater metagenome; Exp Tend CN 90WW
338
264
-
Val
CAC
[ENA]
¢þ
>WENV181371479
OFQV01008671
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
1405
1331
-
Val
CAC
[ENA]
¢þ
>WENV181378963
OFRC01006287
[OFRC] wastewater metagenome; Exp Tend CN 10WW
1327
1401
+
Val
CAC
[ENA]
¢þ
>WENV181381691
OFRF01002645
[OFRF] wastewater metagenome; Exp Tend CN 50WW
2009
1935
-
Val
CAC
[ENA]
¢þ
>WENV181384351
OFRI01000273
[OFRI] wastewater metagenome; Exp Tend VB 90WW
8336
8262
-
Val
CAC
[ENA]
¢þ
>WENV181402508
OFTY01002954
[OFTY] sludge metagenome; sludge
4342
4268
-
Val
CAC
[ENA]
¢þ
>WENV181732392
OGQD01031368
[OGQD] human gut metagenome; faeces
1099
1025
-
Val
CAC
[ENA]
¢þ
>C08002336
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
918904
918978
+
Val
GAC
[Ensembl]
¡û
>WENV183725803
PJQF01018462
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
735
661
-
Val
CAC
[ENA]
¢þ
>WENV183727466
PJTP01000003
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
468984
468910
-
Val
CAC
[ENA]
¢þ
>WENV183728546
PJTQ01000126
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
19618
19692
+
Val
CAC
[ENA]
¢þ
>WENV183730873
PJTS01001631
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
896
970
+
Val
CAC
[ENA]
¢þ
>WENV183733363
PJTY01001343
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
47
121
+
Val
CAC
[ENA]
¢þ
>WENV183733577
PJTY01005127
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
77
3
-
Val
CAC
[ENA]
¢þ
>WENV183733800
PJTY01028591
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
373
299
-
Val
CAC
[ENA]
¢þ
>WENV183735465
PJUB01000010
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
251910
251836
-
Val
CAC
[ENA]
¢þ
>WENV183738997
PJUE01000808
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1463
1537
+
Val
CAC
[ENA]
¢þ
>WENV183740320
PJUF01001167
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2084
2010
-
Val
CAC
[ENA]
¢þ
>WENV170012286
APMI01146664
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2121
2195
+
Val
CAC
[ENA]
¢þ
>WENV170681004
LFEF01041994
[LFEF] freshwater metagenome; waterbloom
282
208
-
Val
CAC
[ENA]
¢þ
>WENV170712786
LNFM01017697
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2574
2500
-
Val
CAC
[ENA]
¢þ
>WENV170713825
LNFM01043435
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1273
1199
-
Val
CAC
[ENA]
¢þ
>WENV170784131
MCHG01000030
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
114151
114077
-
Val
CAC
[ENA]
¢þ
>C181056240
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2948548
2948622
+
Val
CAC
-
¡û
>C191094003
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2816369
2816443
+
Val
CAC
-
¡û
>C191134449
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2208072
2207998
-
Val
CAC
-
¡û
>C191157375
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
969854
969928
+
Val
CAC
-
¡û
>C191166104
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1764056
1764130
+
Val
CAC
-
¡û
>C191220423
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1718159
1718233
+
Val
CAC
-
¡û
>W141551919
JHOF01000018
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
134508
134582
+
Val
CAC
[ENA]
¡û
>W1910182680
BJNC01000006
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
66121
66195
+
Val
CAC
[ENA]
¡û
>W1910374313
FUIE01000010
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
60971
60897
-
Val
CAC
[ENA]
¡û
>W1911566734
PCPB01000001
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
282675
282601
-
Val
CAC
[ENA]
¡û
>W1911566943
PCPF01000001
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
282675
282601
-
Val
CAC
[ENA]
¡û
>W1911567182
PCPK01000001
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
315953
316027
+
Val
CAC
[ENA]
¡û
>W1911567271
PCPM01000002
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
112177
112103
-
Val
CAC
[ENA]
¡û
>W1911567379
PCPO01000002
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
81199
81125
-
Val
CAC
[ENA]
¡û
>W1911760339
QWTZ01000002
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
203732
203658
-
Val
CAC
[ENA]
¡û
>W1810000966
BEWU01000010
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
82804
82730
-
Val
CAC
[ENA]
¡û
>W1810069380
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
2300270
2300196
-
Val
CAC
[ENA]
¡û
>W1810594026
QFYP01000001
Alphaproteobacteria
Phenylobacterium hankyongense HKS-05 [QFYP]
3102579
3102505
-
Val
CAC
[ENA]
¡û
>W1810693174
QLLC01000026
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
38061
38135
+
Val
CAC
[ENA]
¡û
>W11123429
ADUI01000103
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
3768
3694
-
Val
CAC
[ENA]
¡û
>W1511547890
JZRG01000018
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
212287
212213
-
Val
CAC
[ENA]
¡û
>W1511596066
LBNT01000011
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
44836
44910
+
Val
CAC
[ENA]
¡û
>C161089838
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1138187
1138113
-
Val
CAC
[Ensembl]
¡û
>W1610074208
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
40220
40146
-
Val
CAC
[ENA]
¡û
>W1610649168
LJHU01000031
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
4642
4568
-
Val
CAC
[ENA]
¡û
>W1610736195
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
239935
240009
+
Val
CAC
[ENA]
¡û
>W1610738456
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
123646
123720
+
Val
CAC
[ENA]
¡û
>WENV079903
AATN01007526
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
374
300
-
Val
CAC
[ENA]
>W1710071326
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
40220
40146
-
Val
CAC
[ENA]
¡û
>W1710527031
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
726257
726183
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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