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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400216 (247 seq.)
>W1710802908
LJYE01000010
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
52263
52337
+
Gln
TTG
[ENA]
¡û
>W1710802962
LJYF01000012
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
153786
153712
-
Gln
TTG
[ENA]
¡û
>W1710803029
LJYG01000104
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
269550
269476
-
Gln
TTG
[ENA]
¡û
>W1710854942
LLXX01000119
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
342021
341947
-
Gln
TTG
[ENA]
¡û
>W1710854997
LLXY01000188
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
108435
108361
-
Gln
TTG
[ENA]
¡û
>W1710855073
LLXZ01000211
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
38064
38138
+
Gln
TTG
[ENA]
¡û
>W1710855094
LLYA01000112
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
293517
293443
-
Gln
TTG
[ENA]
¡û
>W1710855150
LLYB01000071
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
40880
40954
+
Gln
TTG
[ENA]
¡û
>W1710864240
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
2784451
2784377
-
Gln
TTG
[ENA]
¡û
>W1710877733
LMQJ01000004
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
71077
71003
-
Gln
TTG
[ENA]
¡û
>W1710891416
LNCU01000088
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
125699
125773
+
Gln
TTG
[ENA]
¡û
>W1710892428
LNDS01000043
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
11538
11612
+
Gln
TTG
[ENA]
¡û
>W1711067402
LSEF01000059
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
107521
107595
+
Gln
TTG
[ENA]
¡û
>W1711072976
LSIC01000038
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
9351
9425
+
Gln
TTG
[ENA]
¡û
>W1711124788
LUKO01000111
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
572398
572324
-
Gln
TTG
[ENA]
¡û
>W1711129621
LUUB01000092
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
129040
129114
+
Gln
TTG
[ENA]
¡û
>W1711138892
LVEM01000004
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
520203
520129
-
Gln
TTG
[ENA]
¡û
>W1711180114
LWIG01000009
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
42915
42841
-
Gln
TTG
[ENA]
¡û
>W1711193153
LWUI01000028
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
92107
92181
+
Gln
TTG
[ENA]
¡û
>W1711206749
LXEM01000026
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
92089
92163
+
Gln
TTG
[ENA]
¡û
>W1711317180
MAXB01000063
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
2341
2267
-
Gln
TTG
[ENA]
¡û
>W1711317239
MAXC01000051
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
371683
371609
-
Gln
TTG
[ENA]
¡û
>W1711487058
MKFI01000004
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
773394
773320
-
Gln
TTG
[ENA]
¡û
>W1711501370
MKRN01000172
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
4297
4223
-
Gln
TTG
[ENA]
¡û
>W1711505829
MKVW01000005
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
292119
292193
+
Gln
TTG
[ENA]
¡û
>W1711506168
MKWE01000005
Alphaproteobacteria
Rhodospirillales bacterium 70-18 [MKWE]
801
727
-
Gln
TTG
[ENA]
¡û
>W1711612986
MOXO01000059
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
8812
8738
-
Gln
TTG
[ENA]
¡û
>W1711636719
MPVQ01000008
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
2242
2316
+
Gln
TTG
[ENA]
¡û
>W1711928310
NAEX01000186
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
118431
118357
-
Gln
TTG
[ENA]
¡û
>W1711928394
NAEZ01000177
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
108518
108444
-
Gln
TTG
[ENA]
¡û
>W1711928429
NAFA01000193
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
108518
108444
-
Gln
TTG
[ENA]
¡û
>W1711928607
NAFE01000201
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
5483
5409
-
Gln
TTG
[ENA]
¡û
>W1711928725
NAFG01000176
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
293309
293383
+
Gln
TTG
[ENA]
¡û
>W1711928814
NAFI01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
162024
162098
+
Gln
TTG
[ENA]
¡û
>W1711928880
NAFJ01000156
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
361217
361291
+
Gln
TTG
[ENA]
¡û
>W1711928895
NAFK01000152
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
94172
94246
+
Gln
TTG
[ENA]
¡û
>W1711928948
NAFL01000250
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
2428
2354
-
Gln
TTG
[ENA]
¡û
>W1712049611
NFUH01000218
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
11848
11922
+
Gln
TTG
[ENA]
¡û
>C171021115
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
7309685
7309611
-
Gln
TTG
-
¡û
>C171064687
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
7889221
7889147
-
Gln
TTG
-
¡û
>C171131960
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
5072815
5072741
-
Gln
TTG
-
¡û
>W131164093
ARAG01000008
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
297530
297604
+
Gln
TTG
[ENA]
¡û
>W131164988
ARBF01000079
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
37125
37199
+
Gln
TTG
[ENA]
¡û
>W131170244
ARFJ01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
14476
14402
-
Gln
TTG
[ENA]
¡û
>W131217313
ATWP01000007
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
296369
296295
-
Gln
TTG
[ENA]
¡û
>W131222515
AUBI01000004
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
222763
222837
+
Gln
TTG
[ENA]
¡û
>W131227219
AUEZ01000007
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
42667
42741
+
Gln
TTG
[ENA]
¡û
>W131227288
AUFA01000023
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
48750
48824
+
Gln
TTG
[ENA]
¡û
>W131228552
AUGA01000019
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
10908
10834
-
Gln
TTG
[ENA]
¡û
>W131228688
AUGD01000007
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
81863
81937
+
Gln
TTG
[ENA]
¡û
>W131237398
AUOJ01000203
Alphaproteobacteria
Bradyrhizobium sp. JGI 0001002-A22 [AUOJ]
4078
4004
-
Gln
TTG
[ENA]
¡û
>C003052
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
2907070
2907144
+
Gln
TTG
[Ensembl]
¡û
>C004043
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
2583194
2583268
+
Gln
TTG
[Ensembl]
¡û
>C004086
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
2313556
2313630
+
Gln
TTG
[Ensembl]
¡û
>W141001284
ADOU01000033
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
12052
11978
-
Gln
TTG
[ENA]
¡û
>WENV180262732
OBEQ011411594
[OBEQ] groundwater metagenome; groundwater
219
293
+
Gln
TTG
[ENA]
¢þ
>WENV180304025
OBJH01002277
[OBJH] soil metagenome; soil
30
104
+
Gln
TTG
[ENA]
¢þ
>WENV180345056
OBLM01008327
[OBLM] soil metagenome; soil
548
474
-
Gln
TTG
[ENA]
¢þ
>W141041854
AMCQ01000973
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
545
471
-
Gln
TTG
[ENA]
¡û
>W141043054
AMFB01000018
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
85302
85228
-
Gln
TTG
[ENA]
¡û
>W141063648
APJD01000007
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
449908
449982
+
Gln
TTG
[ENA]
¡û
>WENV180695108
OCZS013045921
[OCZS] soil metagenome; soil
139
65
-
Gln
TTG
[ENA]
¢þ
>W08009484
ABPH01000001
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
21648
21722
+
Gln
TTG
[ENA]
¡û
>WENV181144895
OEHO01126863
[OEHO] metagenome; unknown
168
94
-
Gln
TTG
[ENA]
¢þ
>WENV181166760
OEIU01001698
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
8304
8230
-
Gln
TTG
[ENA]
¢þ
>WENV181166841
OEIU01003135
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
7962
8036
+
Gln
TTG
[ENA]
¢þ
>WENV181166919
OEIU01004142
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6733
6659
-
Gln
TTG
[ENA]
¢þ
>WENV181185715
OELX01000066
[OELX] metagenome; 1998
101
175
+
Gln
TTG
[ENA]
¢þ
>WENV181307873
OFIS01000010
[OFIS] sludge metagenome; sludge
73761
73835
+
Gln
TTG
[ENA]
¢þ
>WENV181312008
OFJB01031930
[OFJB] sludge metagenome; sludge
24
98
+
Gln
TTG
[ENA]
¢þ
>WENV181379271
OFRD01000198
[OFRD] wastewater metagenome; Exp Tend CN 100WW
21936
22010
+
Gln
TTG
[ENA]
¢þ
>WENV181381981
OFRF01043503
[OFRF] wastewater metagenome; Exp Tend CN 50WW
233
307
+
Gln
TTG
[ENA]
¢þ
>WENV181385122
OFRI01036033
[OFRI] wastewater metagenome; Exp Tend VB 90WW
63
137
+
Gln
TTG
[ENA]
¢þ
>WENV181385900
OFRL01000067
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
7714
7640
-
Gln
TTG
[ENA]
¢þ
>WENV181399834
OFSF01000013
[OFSF] wastewater metagenome; Exp Tend VB 100WW
64106
64180
+
Gln
TTG
[ENA]
¢þ
>WENV181401889
OFTX01016825
[OFTX] sludge metagenome; sludge
715
641
-
Gln
TTG
[ENA]
¢þ
>W141150047
AXAB01000033
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
14087
14013
-
Gln
TTG
[ENA]
¡û
>W141150115
AXAD01000002
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
219799
219873
+
Gln
TTG
[ENA]
¡û
>W141150248
AXAF01000039
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
39937
40011
+
Gln
TTG
[ENA]
¡û
>W141150279
AXAG01000015
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
24734
24660
-
Gln
TTG
[ENA]
¡û
>W141150326
AXAH01000013
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
193136
193062
-
Gln
TTG
[ENA]
¡û
>W141150385
AXAI01000014
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
219771
219697
-
Gln
TTG
[ENA]
¡û
>W141150739
AXAP01000090
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
31982
32056
+
Gln
TTG
[ENA]
¡û
>W141151015
AXAS01000052
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
35552
35626
+
Gln
TTG
[ENA]
¡û
>W141151058
AXAT01000177
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
1100
1026
-
Gln
TTG
[ENA]
¡û
>W141151089
AXAU01000002
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
109461
109387
-
Gln
TTG
[ENA]
¡û
>W141151153
AXAV01000018
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
187389
187463
+
Gln
TTG
[ENA]
¡û
>W141151193
AXAW01000009
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
193142
193068
-
Gln
TTG
[ENA]
¡û
>W141151254
AXAX01000023
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
12340
12266
-
Gln
TTG
[ENA]
¡û
>W141151266
AXAY01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
283554
283480
-
Gln
TTG
[ENA]
¡û
>W141151312
AXAZ01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
95452
95526
+
Gln
TTG
[ENA]
¡û
>W141151469
AXBC01000003
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
4045139
4045065
-
Gln
TTG
[ENA]
¡û
>W141168828
AXVG01000010
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
42766
42840
+
Gln
TTG
[ENA]
¡û
>W141169186
AXVP01000014
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
14047
13973
-
Gln
TTG
[ENA]
¡û
>W141220412
AZXU01000002
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
2161369
2161443
+
Gln
TTG
[ENA]
¡û
>W141233886
BAWE01000004
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
1126771
1126845
+
Gln
TTG
[ENA]
¡û
>WENV182409101
OIFG01001741
[OIFG] human gut metagenome; stool
772
846
+
Gln
TTG
[ENA]
¢þ
>WENV182411591
OIFP01003787
[OIFP] human gut metagenome; stool
278
204
-
Gln
TTG
[ENA]
¢þ
>W141240097
CAFK01000263
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
2439
2513
+
Gln
TTG
[ENA]
¡û
>C08005280
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
941336
941265
-
Gln
TTG
[Ensembl]
¡û
>W141276001
JADL01000010
Alphaproteobacteria
Rhodospirillales bacterium URHD0088 [JADL]
288149
288223
+
Gln
TTG
[ENA]
¡û
>W141278099
JAFC01000009
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
100630
100556
-
Gln
TTG
[ENA]
¡û
>WENV182961358
OKWK01002425
[OKWK] human gut metagenome; stool
38
112
+
Gln
TTG
[ENA]
¢þ
>WENV182963166
OKWP01000821
[OKWP] human gut metagenome; stool
2236
2162
-
Gln
TTG
[ENA]
¢þ
>WENV183093336
OLLY01000187
[OLLY] soil metagenome; soil
11625
11551
-
Gln
TTG
[ENA]
¢þ
>WENV183724720
PJQE01055083
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
463
389
-
Gln
TTG
[ENA]
¢þ
>WENV170004452
AGTN01683384
[AGTN] bioreactor metagenome; poplar biomass
133
59
-
Gln
TTG
[ENA]
¢þ
>WENV170577366
FRDC01004917
[FRDC] freshwater metagenome; water
4814
4888
+
Gln
TTG
[ENA]
¢þ
>WENV170705756
LNAP01000203
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
62343
62417
+
Gln
TTG
[ENA]
¢þ
>WENV170706124
LNAP01001234
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
12247
12321
+
Gln
TTG
[ENA]
¢þ
>WENV170706148
LNAP01001376
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
255
329
+
Gln
TTG
[ENA]
¢þ
>WENV170709955
LNFM01000979
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11780
11854
+
Gln
TTG
[ENA]
¢þ
>WENV170710502
LNFM01001904
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
70877
70803
-
Gln
TTG
[ENA]
¢þ
>WENV170710633
LNFM01002260
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8614
8688
+
Gln
TTG
[ENA]
¢þ
>WENV170711441
LNFM01005244
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
257
331
+
Gln
TTG
[ENA]
¢þ
>WENV170973545
MTKY01047279
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1616
1542
-
Gln
TTG
[ENA]
¢þ
>WENV170975007
MTKY01085218
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
212
138
-
Gln
TTG
[ENA]
¢þ
>C181113166
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
3326525
3326599
+
Gln
TTG
-
¡û
>C181178157
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
8418733
8418659
-
Gln
TTG
-
¡û
>C181178185
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
1667129
1667203
+
Gln
TTG
-
¡û
>C181178229
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
1547678
1547752
+
Gln
TTG
-
¡û
>C181181556
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
3129339
3129413
+
Gln
TTG
-
¡û
>C181203868
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
5902711
5902637
-
Gln
TTG
-
¡û
>C191019681
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
1511601
1511675
+
Gln
TTG
-
¡û
>C191019750
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
6970773
6970699
-
Gln
TTG
-
¡û
>C191071685
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
5782053
5781979
-
Gln
TTG
-
¡û
>C191071735
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
5354424
5354350
-
Gln
TTG
-
¡û
>C191092022
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
2842413
2842487
+
Gln
TTG
-
¡û
>C191171964
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
3405838
3405764
-
Gln
TTG
-
¡û
>C191186624
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
608982
609056
+
Gln
TTG
-
¡û
>W09104100
AALJ01000001
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
1736042
1736116
+
Gln
TTG
[ENA]
¡û
>W1910183096
BJNK01000039
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
1297
1223
-
Gln
TTG
[ENA]
¡û
>W1910183107
BJNL01000009
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
41676
41750
+
Gln
TTG
[ENA]
¡û
>C09106287
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
1232956
1233030
+
Gln
TTG
[Ensembl]
¡û
>W1910598259
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
6354809
6354735
-
Gln
TTG
[ENA]
¡û
>W1910598938
LBJC01000020
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
475035
475109
+
Gln
TTG
[ENA]
¡û
>W1910598978
LBJM01000001
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
41121
41047
-
Gln
TTG
[ENA]
¡û
>W1910599027
LBJQ01000009
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
429269
429343
+
Gln
TTG
[ENA]
¡û
>W1910611557
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
5951916
5951990
+
Gln
TTG
[ENA]
¡û
>W1910693490
MDEP01000052
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
264498
264424
-
Gln
TTG
[ENA]
¡û
>W1910840281
MZXW01000037
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
319
245
-
Gln
TTG
[ENA]
¡û
>W1911245277
NSJY01000013
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
1117770
1117844
+
Gln
TTG
[ENA]
¡û
>W1911409768
NWTE01000001
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
1024041
1023967
-
Gln
TTG
[ENA]
¡û
>W1911409840
NWTF01000010
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
2453
2379
-
Gln
TTG
[ENA]
¡û
>W1911409864
NWTG01000001
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
333953
334027
+
Gln
TTG
[ENA]
¡û
>W1911409997
NWTI01000004
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
262405
262331
-
Gln
TTG
[ENA]
¡û
>W1911629525
PSRR01000471
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
2055
2129
+
Gln
TTG
[ENA]
¡û
>W1911629560
PSRS01000088
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
13409
13483
+
Gln
TTG
[ENA]
¡û
>W1911629605
PSRT01000065
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
45720
45646
-
Gln
TTG
[ENA]
¡û
>W1911817849
QZMV01000002
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
833754
833680
-
Gln
TTG
[ENA]
¡û
>W1810089288
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
4510152
4510078
-
Gln
TTG
[ENA]
¡û
>W1810089638
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
7834671
7834745
+
Gln
TTG
[ENA]
¡û
>W1810104437
PGVG01000040
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
62115
62041
-
Gln
TTG
[ENA]
¡û
>W1810289885
PTFE01000115
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
10193
10267
+
Gln
TTG
[ENA]
¡û
>W1810367865
PVYZ01000006
Alphaproteobacteria
Rhizobium tropici NFR14 [PVYZ]
49001
48927
-
Gln
TTG
[ENA]
¡û
>SRA1005369
SRR006907.216538
metagenomic water samples (SRP000427)
119
45
-
Gln
TTG
[SRA]
>W1810395551
PYCM01000606
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
18064
17990
-
Gln
TTG
[ENA]
¡û
>W1810395614
PYCN01000012
Alphaproteobacteria
Bradyrhizobium algeriense RST91 [PYCN]
169613
169687
+
Gln
TTG
[ENA]
¡û
>W1810400088
PYFV01000001
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
662095
662169
+
Gln
TTG
[ENA]
¡û
>W1810400155
PYFW01000003
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
27864
27938
+
Gln
TTG
[ENA]
¡û
>W1810400192
PYFX01000003
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
762867
762793
-
Gln
TTG
[ENA]
¡û
>W1810682810
QKVK01000008
Alphaproteobacteria
Aestuariivirga litoralis KCTC 52945 [QKVK]
107802
107876
+
Gln
TTG
[ENA]
¡û
>W1810789373
QRGO01000002
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
551799
551725
-
Gln
TTG
[ENA]
¡û
>C151066550
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
7394722
7394648
-
Gln
TTG
[Ensembl]
¡û
>W1510973743
JGCL01000014
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
187172
187246
+
Gln
TTG
[ENA]
¡û
>W1511353602
JRPN01000004
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
165765
165839
+
Gln
TTG
[ENA]
¡û
>W1511507998
JXOF01000182
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
264539
264465
-
Gln
TTG
[ENA]
¡û
>W1511533274
JYMR01000028
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
61063
60989
-
Gln
TTG
[ENA]
¡û
>W1511533355
JYMT01000018
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
83105
83179
+
Gln
TTG
[ENA]
¡û
>W1511533407
JYMU01000016
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
80764
80838
+
Gln
TTG
[ENA]
¡û
>W1511681416
LFIP01000055
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
66953
66879
-
Gln
TTG
[ENA]
¡û
>W1511681491
LFIQ01000124
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
74384
74310
-
Gln
TTG
[ENA]
¡û
>W1511706014
LGTB01000045
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
61098
61172
+
Gln
TTG
[ENA]
¡û
>W1511706712
LGUJ01000017
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
92299
92373
+
Gln
TTG
[ENA]
¡û
>C121000480
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
7363275
7363201
-
Gln
TTG
[Ensembl]
¡û
>C121000739
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
5475585
5475511
-
Gln
TTG
[Ensembl]
¡û
>C161001029
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
6444441
6444515
+
Gln
TTG
-
¡û
>C161017404
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
4513822
4513748
-
Gln
TTG
[Ensembl]
¡û
>C161034224
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
2226454
2226528
+
Gln
TTG
-
¡û
>C161062524
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
2473506
2473580
+
Gln
TTG
[Ensembl]
¡û
>C161097212
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
6516853
6516779
-
Gln
TTG
[Ensembl]
¡û
>C161107868
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
2183761
2183687
-
Gln
TTG
-
¡û
>C161107942
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
7489426
7489352
-
Gln
TTG
-
¡û
>W121036195
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
2739467
2739541
+
Gln
TTG
[ENA]
¡û
>W121062457
AJJK01001345
Alphaproteobacteria
Bradyrhizobium elkanii 587 [AJJK]
1798
1724
-
Gln
TTG
[ENA]
¡û
>W121065217
AJPV01000361
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
5876
5802
-
Gln
TTG
[ENA]
¡û
>W121065252
AJPW01000266
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
14515
14589
+
Gln
TTG
[ENA]
¡û
>W121065309
AJPX01000560
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
2626
2700
+
Gln
TTG
[ENA]
¡û
>W121065356
AJPY01000535
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
2650
2724
+
Gln
TTG
[ENA]
¡û
>W121065404
AJPZ01000376
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
1632
1558
-
Gln
TTG
[ENA]
¡û
>W121065441
AJQA01000265
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
22806
22732
-
Gln
TTG
[ENA]
¡û
>W121065501
AJQB01000534
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
7215
7141
-
Gln
TTG
[ENA]
¡û
>W121065558
AJQC01000713
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
17035
17109
+
Gln
TTG
[ENA]
¡û
>W121065585
AJQD01000419
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
17030
17104
+
Gln
TTG
[ENA]
¡û
>W121065638
AJQE01000269
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
43928
44002
+
Gln
TTG
[ENA]
¡û
>W121065693
AJQF01000412
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
2422
2348
-
Gln
TTG
[ENA]
¡û
>W121065708
AJQG01000064
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
41432
41358
-
Gln
TTG
[ENA]
¡û
>W121065780
AJQH01000248
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
2570
2644
+
Gln
TTG
[ENA]
¡û
>W121065812
AJQI01000136
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
12805
12731
-
Gln
TTG
[ENA]
¡û
>W121065851
AJQJ01000133
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
21616
21542
-
Gln
TTG
[ENA]
¡û
>W121065914
AJQK01000179
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
28084
28010
-
Gln
TTG
[ENA]
¡û
>W121065956
AJQL01000148
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
4181
4255
+
Gln
TTG
[ENA]
¡û
>W121085063
AKIY01000078
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
6824
6750
-
Gln
TTG
[ENA]
¡û
>W121127091
CAFH01000219
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
6059
6133
+
Gln
TTG
[ENA]
¡û
>W121127140
CAFI01000355
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
6042
6116
+
Gln
TTG
[ENA]
¡û
>W1610049392
BBEX01000172
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
1323
1397
+
Gln
TTG
[ENA]
¡û
>C131000831
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
6087213
6087139
-
Gln
TTG
[Ensembl]
¡û
>W1610514405
FMAE01000001
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
614394
614320
-
Gln
TTG
[ENA]
¡û
>W1610514624
FMAI01000018
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
68384
68310
-
Gln
TTG
[ENA]
¡û
>W1610549165
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
3129185
3129111
-
Gln
TTG
[ENA]
¡û
>W1610550315
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
4793609
4793535
-
Gln
TTG
[ENA]
¡û
>W1610666765
LJYE01000010
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
52263
52337
+
Gln
TTG
[ENA]
¡û
>W1610666819
LJYF01000012
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
153786
153712
-
Gln
TTG
[ENA]
¡û
>W1610666886
LJYG01000104
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
269550
269476
-
Gln
TTG
[ENA]
¡û
>W1610717283
LLXX01000119
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
342021
341947
-
Gln
TTG
[ENA]
¡û
>W1610717338
LLXY01000188
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
108435
108361
-
Gln
TTG
[ENA]
¡û
>W1610717414
LLXZ01000211
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
38064
38138
+
Gln
TTG
[ENA]
¡û
>W1610717435
LLYA01000112
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
293517
293443
-
Gln
TTG
[ENA]
¡û
>W1610717491
LLYB01000071
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
40880
40954
+
Gln
TTG
[ENA]
¡û
>W1610726586
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
2784451
2784377
-
Gln
TTG
[ENA]
¡û
>W1610740079
LMQJ01000004
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
71077
71003
-
Gln
TTG
[ENA]
¡û
>W1610751781
LNCU01000088
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
125699
125773
+
Gln
TTG
[ENA]
¡û
>W1610752694
LNDS01000043
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
11538
11612
+
Gln
TTG
[ENA]
¡û
>W1610907972
LSEF01000059
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
107521
107595
+
Gln
TTG
[ENA]
¡û
>W1610912236
LSIC01000038
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
9351
9425
+
Gln
TTG
[ENA]
¡û
>W1610935760
LUKO01000111
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
572398
572324
-
Gln
TTG
[ENA]
¡û
>W1610940694
LUUB01000092
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
129040
129114
+
Gln
TTG
[ENA]
¡û
>WENV077184
AAFX01001996
Soil microbial communities from Minnesota Farm
1827
1751
-
Gln
TTG
[ENA]
>W1610949900
LVEM01000004
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
520203
520129
-
Gln
TTG
[ENA]
¡û
>W1611061250
MAXB01000063
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
2341
2267
-
Gln
TTG
[ENA]
¡û
>W1611061309
MAXC01000051
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
371683
371609
-
Gln
TTG
[ENA]
¡û
>W1710045791
BBEX01000172
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
1323
1397
+
Gln
TTG
[ENA]
¡û
>W1710500095
FMAE01000001
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
614394
614320
-
Gln
TTG
[ENA]
¡û
>W1710500314
FMAI01000018
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
68384
68310
-
Gln
TTG
[ENA]
¡û
>W1710513075
FMZW01000081
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
2476
2550
+
Gln
TTG
[ENA]
¡û
>W1710516773
FNCU01000033
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
45400
45474
+
Gln
TTG
[ENA]
¡û
>W1710564274
FOQJ01000006
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
310090
310016
-
Gln
TTG
[ENA]
¡û
>W1710564416
FOQM01000003
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
311172
311246
+
Gln
TTG
[ENA]
¡û
>W1710569815
FOUS01000010
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
337046
336972
-
Gln
TTG
[ENA]
¡û
>W1710571310
FOVU01000007
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
48134
48060
-
Gln
TTG
[ENA]
¡û
>W1710578534
FPBQ01000026
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
112587
112661
+
Gln
TTG
[ENA]
¡û
>W1710594284
FSRD01000002
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
1233530
1233604
+
Gln
TTG
[ENA]
¡û
>W1710652739
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
3129185
3129111
-
Gln
TTG
[ENA]
¡û
>W1710659041
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
4793609
4793535
-
Gln
TTG
[ENA]
¡û
>W1710735603
LGHK01000180
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
30099
30173
+
Gln
TTG
[ENA]
¡û
>W1710735642
LGHL01000085
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
80743
80817
+
Gln
TTG
[ENA]
¡û
>W1710735678
LGHM01000032
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
37595
37669
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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