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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400238 (109 seq.)
>W1710860220
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
692994
692920
-
Gln
CTG
[ENA]
¡û
>W1710863969
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
755011
754937
-
Gln
CTG
[ENA]
¡û
>W1710868839
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
565368
565442
+
Gln
CTG
[ENA]
¡û
>W1710870590
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1811921
1811993
+
Gln
CTG
[ENA]
¡û
>W1710875104
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
739665
739739
+
Gln
CTG
[ENA]
¡û
>W1710875930
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
713852
713778
-
Gln
CTG
[ENA]
¡û
>W1710876024
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
248486
248560
+
Gln
CTG
[ENA]
¡û
>W1710876521
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
201797
201871
+
Gln
CTG
[ENA]
¡û
>W1710878573
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
200321
200395
+
Gln
CTG
[ENA]
¡û
>W1710909096
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
229443
229515
+
Gln
CTG
[ENA]
¡û
>W1711009281
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
308589
308663
+
Gln
CTG
[ENA]
¡û
>W131098957
AOSO01000004
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
698474
698400
-
Gln
CTG
[ENA]
¡û
>W1711074822
LSJW01000243
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
69716
69790
+
Gln
CTG
[ENA]
¡û
>W1711173327
LWCU01000001
Actinomycetota
Microbacterium sp. H83 [LWCU]
75403
75329
-
Gln
CTG
[ENA]
¡û
>W1711318579
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
284179
284253
+
Gln
CTG
[ENA]
¡û
>W1711385523
MEEH01000045
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
70270
70196
-
Gln
CTG
[ENA]
¡û
>W131162188
AQYI01000007
Actinomycetota
Microbacterium paraoxydans 77MFTsu3.2 [AQYI]
126154
126080
-
Gln
CTG
[ENA]
¡û
>W131184982
ARTJ01000002
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
612518
612592
+
Gln
CTG
[ENA]
¡û
>W131226607
AUEM01000005
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
69560
69486
-
Gln
CTG
[ENA]
¡û
>W1711503436
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
484456
484382
-
Gln
CTG
[ENA]
¡û
>W1711719870
MTIO01000001
Actinomycetota
Microbacterium oleivorans [MTIO]
223121
223195
+
Gln
CTG
[ENA]
¡û
>C171065819
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
3472101
3472175
+
Gln
CTG
-
¡û
>C171073909
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
1590600
1590674
+
Gln
CTG
-
¡û
>WENV180095831
MTBK01092088
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2596
2668
+
Gln
CTG
[ENA]
¢þ
>W141075426
ATAO01000206
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
44595
44669
+
Gln
CTG
[ENA]
¡û
>WENV181385121
OFRI01035975
[OFRI] wastewater metagenome; Exp Tend VB 90WW
875
803
-
Gln
CTG
[ENA]
¢þ
>WENV181385293
OFRI01059401
[OFRI] wastewater metagenome; Exp Tend VB 90WW
212
286
+
Gln
CTG
[ENA]
¢þ
>W141223167
BADA01000090
Actinomycetota
Microbacterium sp. B19 [BADA]
1812
1738
-
Gln
CTG
[ENA]
¡û
>W141256068
CBVQ010000001
Actinomycetota
Microbacterium sp. C448 [CBVQ]
5145
5071
-
Gln
CTG
[ENA]
¡û
>W141289398
JARC01000025
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
121196
121270
+
Gln
CTG
[ENA]
¡û
>W141289443
JARD01000012
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
322468
322394
-
Gln
CTG
[ENA]
¡û
>W141289551
JARF01000036
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
334869
334795
-
Gln
CTG
[ENA]
¡û
>WENV170578192
FUFK010003933
[FUFK] metagenome; unknown
733
807
+
Gln
CTG
[ENA]
¢þ
>W141484305
JFYO01000001
Actinomycetota
Microbacterium oleivorans [JFYO]
546931
546857
-
Gln
CTG
[ENA]
¡û
>C181004096
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
2042650
2042578
-
Gln
CTG
-
¡û
>C181200422
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
1598539
1598611
+
Gln
CTG
-
¡û
>C191074620
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
2103288
2103216
-
Gln
CTG
-
¡û
>C191074820
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
1592210
1592138
-
Gln
CTG
-
¡û
>C191074863
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
2114285
2114213
-
Gln
CTG
-
¡û
>C191185962
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
1582446
1582518
+
Gln
CTG
-
¡û
>W141739365
JNNT01000185
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
23084
23156
+
Gln
CTG
[ENA]
¡û
>W1910181920
BJML01000006
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
10255
10183
-
Gln
CTG
[ENA]
¡û
>W1910183334
BJNQ01000003
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
29575
29647
+
Gln
CTG
[ENA]
¡û
>W1910184041
BJOG01000005
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
148918
148846
-
Gln
CTG
[ENA]
¡û
>W1910211959
FMIR01000002
Actinomycetota
Microbacterium oxydans [FMIR]
3484
3412
-
Gln
CTG
[ENA]
¡û
>W1911075291
NMUM01000023
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
149978
150050
+
Gln
CTG
[ENA]
¡û
>W1911075311
NMUN01000004
Actinomycetota
Microbacterium sp. BR1 [NMUN]
174541
174613
+
Gln
CTG
[ENA]
¡û
>W1911140366
NOYP01000115
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
21222
21294
+
Gln
CTG
[ENA]
¡û
>W1911566587
PCOY01000001
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
200034
199962
-
Gln
CTG
[ENA]
¡û
>W1911566845
PCPD01000006
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
205922
205994
+
Gln
CTG
[ENA]
¡û
>W1911566982
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
548965
549037
+
Gln
CTG
[ENA]
¡û
>W1911567099
PCPI01000001
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
332792
332720
-
Gln
CTG
[ENA]
¡û
>W1911567232
PCPL01000001
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
332797
332725
-
Gln
CTG
[ENA]
¡û
>W1911567506
PCPQ01000001
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
332789
332717
-
Gln
CTG
[ENA]
¡û
>W1810234121
PPEE01000004
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
86410
86482
+
Gln
CTG
[ENA]
¡û
>W1810248599
PQBR01000011
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
53040
52968
-
Gln
CTG
[ENA]
¡û
>W1810475503
QAJB01000388
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
126
198
+
Gln
CTG
[ENA]
¡û
>W1810538336
QDFT01000007
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
32717
32645
-
Gln
CTG
[ENA]
¡û
>W1810538495
QDFV01000003
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
381656
381584
-
Gln
CTG
[ENA]
¡û
>W1810724690
QOAY01000306
Actinomycetota
Microbacterium sp. H6 [QOAY]
20456
20528
+
Gln
CTG
[ENA]
¡û
>W1810743448
QORO01000001
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
934975
934903
-
Gln
CTG
[ENA]
¡û
>W1810787051
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
405076
405004
-
Gln
CTG
[ENA]
¡û
>W1810860828
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
1987493
1987565
+
Gln
CTG
[ENA]
¡û
>W1810861487
QTTX01000002
Actinomycetota
Microbacterium sp. 1294 [QTTX]
865299
865371
+
Gln
CTG
[ENA]
¡û
>C151093234
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
612668
612742
+
Gln
CTG
-
¡û
>W1510085889
CDWI01000011
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
841462
841534
+
Gln
CTG
[ENA]
¡û
>C11115191
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
3480768
3480842
+
Gln
CTG
[Ensembl]
¡û
>W1511348047
JRKC01000068
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
17822
17896
+
Gln
CTG
[ENA]
¡û
>W1511509294
JXQX01000038
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
68718
68644
-
Gln
CTG
[ENA]
¡û
>W1511510248
JXRU01000038
Actinomycetota
Microbacterium sp. SA39 [JXRU]
109930
109856
-
Gln
CTG
[ENA]
¡û
>W1511528733
JYIU01000046
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
321304
321230
-
Gln
CTG
[ENA]
¡û
>W1511528771
JYIV01000030
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
275199
275273
+
Gln
CTG
[ENA]
¡û
>W1511528816
JYIW01000026
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
669208
669136
-
Gln
CTG
[ENA]
¡û
>W1511528936
JYIZ01000053
Actinomycetota
Microbacterium terrae DSM 12510 [JYIZ]
111705
111631
-
Gln
CTG
[ENA]
¡û
>W1511588877
LBCR01000030
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
240651
240725
+
Gln
CTG
[ENA]
¡û
>W1610068276
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
94542
94616
+
Gln
CTG
[ENA]
¡û
>W1610068325
BCRG01000002
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
60541
60615
+
Gln
CTG
[ENA]
¡û
>W1610590701
LDRQ01000002
Actinomycetota
Microbacterium oxydans [LDRQ]
101913
101987
+
Gln
CTG
[ENA]
¡û
>W1610590749
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
6630
6556
-
Gln
CTG
[ENA]
¡û
>W1610590824
LDRS01000160
Actinomycetota
Microbacterium testaceum [LDRS]
2023
1949
-
Gln
CTG
[ENA]
¡û
>W1610590883
LDRU01000027
Actinomycetota
Microbacterium testaceum [LDRU]
29368
29294
-
Gln
CTG
[ENA]
¡û
>W1610590930
LDRV01000060
Actinomycetota
Microbacterium testaceum [LDRV]
51913
51839
-
Gln
CTG
[ENA]
¡û
>W1610722566
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
692994
692920
-
Gln
CTG
[ENA]
¡û
>W1610726315
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
755011
754937
-
Gln
CTG
[ENA]
¡û
>W1610731185
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
565368
565442
+
Gln
CTG
[ENA]
¡û
>W1610732417
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
164604
164676
+
Gln
CTG
[ENA]
¡û
>W1610732936
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1811921
1811993
+
Gln
CTG
[ENA]
¡û
>W1610737450
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
739665
739739
+
Gln
CTG
[ENA]
¡û
>W1610738276
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
713852
713778
-
Gln
CTG
[ENA]
¡û
>W1610738370
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
248486
248560
+
Gln
CTG
[ENA]
¡û
>W1610738867
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
201797
201871
+
Gln
CTG
[ENA]
¡û
>W1610740919
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
200321
200395
+
Gln
CTG
[ENA]
¡û
>W1610767455
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
229443
229515
+
Gln
CTG
[ENA]
¡û
>W1610857801
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
308589
308663
+
Gln
CTG
[ENA]
¡û
>W1610914127
LSJW01000243
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
69716
69790
+
Gln
CTG
[ENA]
¡û
>W1610981932
LWCU01000001
Actinomycetota
Microbacterium sp. H83 [LWCU]
75403
75329
-
Gln
CTG
[ENA]
¡û
>W1611061922
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
284179
284253
+
Gln
CTG
[ENA]
¡û
>W1710065649
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
94542
94616
+
Gln
CTG
[ENA]
¡û
>W1710065698
BCRG01000002
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
60541
60615
+
Gln
CTG
[ENA]
¡û
>W1710516580
FNCR01000001
Actinomycetota
Microbacterium sp. 77mftsu3.1 [FNCR]
123620
123546
-
Gln
CTG
[ENA]
¡û
>W1710525091
FNJG01000002
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
501278
501206
-
Gln
CTG
[ENA]
¡û
>W1710526739
FNKN01000001
Actinomycetota
Microbacterium sp. cf332 [FNKN]
511540
511468
-
Gln
CTG
[ENA]
¡û
>W1710597976
FTNQ01000001
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
178764
178838
+
Gln
CTG
[ENA]
¡û
>W1710600062
FTPQ01000002
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
501082
501010
-
Gln
CTG
[ENA]
¡û
>W1710709981
LDRQ01000002
Actinomycetota
Microbacterium oxydans [LDRQ]
101913
101987
+
Gln
CTG
[ENA]
¡û
>W1710710029
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
6630
6556
-
Gln
CTG
[ENA]
¡û
>W1710710104
LDRS01000160
Actinomycetota
Microbacterium testaceum [LDRS]
2023
1949
-
Gln
CTG
[ENA]
¡û
>W1710710163
LDRU01000027
Actinomycetota
Microbacterium testaceum [LDRU]
29368
29294
-
Gln
CTG
[ENA]
¡û
>W1710710210
LDRV01000060
Actinomycetota
Microbacterium testaceum [LDRV]
51913
51839
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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