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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400244 (97 seq.)
>W1710808946
LKDZ01000051
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
9651
9725
+
Arg
CCT
[ENA]
¡û
>W1710821633
LKTU01000021
Betaproteobacteria
Variovorax paradoxus [LKTU]
78164
78090
-
Arg
CCT
[ENA]
¡û
>W1710821674
LKTV01000014
Betaproteobacteria
Variovorax paradoxus [LKTV]
71366
71292
-
Arg
CCT
[ENA]
¡û
>W1710821722
LKTW01000012
Betaproteobacteria
Variovorax paradoxus [LKTW]
69741
69667
-
Arg
CCT
[ENA]
¡û
>W1710821788
LKTX01000026
Betaproteobacteria
Variovorax paradoxus [LKTX]
41295
41369
+
Arg
CCT
[ENA]
¡û
>W1710821829
LKTY01000009
Betaproteobacteria
Variovorax paradoxus [LKTY]
71291
71217
-
Arg
CCT
[ENA]
¡û
>W1710821882
LKTZ01000010
Betaproteobacteria
Variovorax paradoxus [LKTZ]
71359
71285
-
Arg
CCT
[ENA]
¡û
>W1710860143
LMCQ01000019
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
10008
9934
-
Arg
CCT
[ENA]
¡û
>W1710861787
LMDW01000018
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
173279
173353
+
Arg
CCT
[ENA]
¡û
>W1710862489
LMEK01000022
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
244943
245017
+
Arg
CCT
[ENA]
¡û
>W1710863079
LMEV01000016
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
273295
273221
-
Arg
CCT
[ENA]
¡û
>W1710882318
LMTS01000092
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
26555
26481
-
Arg
CCT
[ENA]
¡û
>W1711123835
LUJJ01000024
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
16263
16337
+
Arg
CCT
[ENA]
¡û
>W1711143363
LVHG01000052
Betaproteobacteria
Variovorax paradoxus [LVHG]
11767
11841
+
Arg
CCT
[ENA]
¡û
>W1711386497
MEFM01000019
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
235350
235276
-
Arg
CCT
[ENA]
¡û
>W1711387493
MEGR01000048
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
34669
34595
-
Arg
CCT
[ENA]
¡û
>W1711506616
MKWO01000019
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
295789
295863
+
Arg
CCT
[ENA]
¡û
>W131174619
ARIP01000044
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
63608
63682
+
Arg
CCT
[ENA]
¡û
>W131180336
ARNA01000041
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
179526
179600
+
Arg
CCT
[ENA]
¡û
>WENV181364808
OFPD01001922
[OFPD] sediment metagenome; Lake sediment
1037
963
-
Arg
CCT
[ENA]
¢þ
>WENV181364982
OFPG01006291
[OFPG] sediment metagenome; Lake sediment
91
165
+
Arg
CCT
[ENA]
¢þ
>W141170107
AXWZ01000014
Betaproteobacteria
Variovorax sp. JGI 0001020-M05 [AXWZ]
12505
12579
+
Arg
CCT
[ENA]
¡û
>W141170117
AXXB01000002
Betaproteobacteria
Variovorax sp. JGI 0001016-C20 [AXXB]
36407
36481
+
Arg
CCT
[ENA]
¡û
>W141170125
AXXC01000011
Betaproteobacteria
Variovorax sp. JGI 0001014-H11 [AXXC]
19764
19838
+
Arg
CCT
[ENA]
¡û
>W141170134
AXXE01000009
Betaproteobacteria
Variovorax sp. JGI 0001011-P21 [AXXE]
10575
10649
+
Arg
CCT
[ENA]
¡û
>W141170370
AXXS01000023
Betaproteobacteria
Variovorax sp. JGI 0001013-M04 [AXXS]
6045
5971
-
Arg
CCT
[ENA]
¡û
>W141170379
AXXT01000006
Betaproteobacteria
Variovorax sp. JGI 0001013-L10 [AXXT]
14533
14607
+
Arg
CCT
[ENA]
¡û
>WENV183731130
PJTS01011844
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
829
903
+
Arg
CCT
[ENA]
¢þ
>WENV183735149
PJUA01001238
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1668
1742
+
Arg
CCT
[ENA]
¢þ
>WENV183735664
PJUB01000377
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
16419
16493
+
Arg
CCT
[ENA]
¢þ
>WENV183736246
PJUC01000242
[PJUC] soil metagenome; Soil enriched on filter paper
24643
24569
-
Arg
CCT
[ENA]
¢þ
>WENV183741536
PJUG01000050
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
127796
127722
-
Arg
CCT
[ENA]
¢þ
>WENV183741974
PJUH01000023
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
110180
110254
+
Arg
CCT
[ENA]
¢þ
>WENV183746517
POYD01049250
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
1002
1073
+
Arg
CCT
[ENA]
¢þ
>WENV170559495
CXWL01125957
[CXWL] groundwater metagenome; biofilm material
3426
3352
-
Arg
CCT
[ENA]
¢þ
>WENV170706902
LNAP01008675
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23
97
+
Arg
CCT
[ENA]
¢þ
>WENV170707896
LNAP01038287
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23
97
+
Arg
CCT
[ENA]
¢þ
>C181078476
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
6090356
6090430
+
Arg
CCT
-
¡û
>C181159393
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
4983326
4983252
-
Arg
CCT
-
¡û
>W141558075
JHVQ01000005
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
439632
439706
+
Arg
CCT
[ENA]
¡û
>W09119937
ACEE01000032
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
33267
33341
+
Arg
CCT
[ENA]
¡û
>C09111105
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
4743371
4743445
+
Arg
CCT
[Ensembl]
¡û
>C141002552
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
4918934
4919008
+
Arg
CCT
[Ensembl]
¡û
>W1910792824
MRCN01000005
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
296924
296850
-
Arg
CCT
[ENA]
¡û
>W1911496719
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
1330894
1330820
-
Arg
CCT
[ENA]
¡û
>W1911647331
QAJK01000035
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
43758
43684
-
Arg
CCT
[ENA]
¡û
>W1911775307
QXMN01000003
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
54567
54641
+
Arg
CCT
[ENA]
¡û
>W1810046181
NNBQ01000003
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
262691
262765
+
Arg
CCT
[ENA]
¡û
>W1810046284
NNBR01000004
Betaproteobacteria
Variovorax sp. B2 [NNBR]
262692
262766
+
Arg
CCT
[ENA]
¡û
>W1810072214
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
2287059
2287133
+
Arg
CCT
[ENA]
¡û
>W1810192715
PKMT01000002
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
10285
10359
+
Arg
CCT
[ENA]
¡û
>W1810392064
PXZZ01000055
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
21873
21947
+
Arg
CCT
[ENA]
¡û
>W1810486665
QAYA01000006
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
155199
155273
+
Arg
CCT
[ENA]
¡û
>W1810672544
QJTM01000007
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
155199
155273
+
Arg
CCT
[ENA]
¡û
>W1810676102
QKLT01000005
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
155199
155273
+
Arg
CCT
[ENA]
¡û
>W1810682483
QKUE01000007
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
155199
155273
+
Arg
CCT
[ENA]
¡û
>W1511352978
JROV01001124
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
631
557
-
Arg
CCT
[ENA]
¡û
>C11123584
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
5666510
5666584
+
Arg
CCT
[Ensembl]
¡û
>W1511508942
JXQQ01000084
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
77821
77895
+
Arg
CCT
[ENA]
¡û
>W1511555024
JZWI01000054
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
36701
36775
+
Arg
CCT
[ENA]
¡û
>C161073185
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
2838617
2838543
-
Arg
CCT
[Ensembl]
¡û
>W1610047718
BBDP01000025
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
12240
12166
-
Arg
CCT
[ENA]
¡û
>W1610072136
BCUS01000003
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
2960
3034
+
Arg
CCT
[ENA]
¡û
>W1610072220
BCUT01000005
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
113597
113523
-
Arg
CCT
[ENA]
¡û
>W121084958
AKIW01000025
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
45969
45895
-
Arg
CCT
[ENA]
¡û
>W1610685595
LKTU01000021
Betaproteobacteria
Variovorax paradoxus [LKTU]
78164
78090
-
Arg
CCT
[ENA]
¡û
>W1610685636
LKTV01000014
Betaproteobacteria
Variovorax paradoxus [LKTV]
71366
71292
-
Arg
CCT
[ENA]
¡û
>W1610685684
LKTW01000012
Betaproteobacteria
Variovorax paradoxus [LKTW]
69741
69667
-
Arg
CCT
[ENA]
¡û
>W1610685750
LKTX01000026
Betaproteobacteria
Variovorax paradoxus [LKTX]
41295
41369
+
Arg
CCT
[ENA]
¡û
>W1610685791
LKTY01000009
Betaproteobacteria
Variovorax paradoxus [LKTY]
71291
71217
-
Arg
CCT
[ENA]
¡û
>W1610685844
LKTZ01000010
Betaproteobacteria
Variovorax paradoxus [LKTZ]
71359
71285
-
Arg
CCT
[ENA]
¡û
>W1610722489
LMCQ01000019
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
10008
9934
-
Arg
CCT
[ENA]
¡û
>W1610724133
LMDW01000018
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
173279
173353
+
Arg
CCT
[ENA]
¡û
>W1610724835
LMEK01000022
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
244943
245017
+
Arg
CCT
[ENA]
¡û
>W1610725425
LMEV01000016
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
273295
273221
-
Arg
CCT
[ENA]
¡û
>W1610744244
LMTS01000092
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
26555
26481
-
Arg
CCT
[ENA]
¡û
>W1610954371
LVHG01000052
Betaproteobacteria
Variovorax paradoxus [LVHG]
11767
11841
+
Arg
CCT
[ENA]
¡û
>W1710044228
BBDP01000025
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
12240
12166
-
Arg
CCT
[ENA]
¡û
>W1710069338
BCUS01000003
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
2960
3034
+
Arg
CCT
[ENA]
¡û
>W1710069422
BCUT01000005
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
113597
113523
-
Arg
CCT
[ENA]
¡û
>W1710506211
FMUJ01000008
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
248757
248683
-
Arg
CCT
[ENA]
¡û
>W1710512963
FMZU01000018
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
150504
150430
-
Arg
CCT
[ENA]
¡û
>W1710517936
FNDR01000004
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
310505
310579
+
Arg
CCT
[ENA]
¡û
>W1710530041
FNOL01000015
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
7257
7183
-
Arg
CCT
[ENA]
¡û
>W1710531377
FNPM01000008
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
237402
237328
-
Arg
CCT
[ENA]
¡û
>W1710534034
FNRO01000003
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
492937
492863
-
Arg
CCT
[ENA]
¡û
>W1710538146
FNUI01000008
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
186846
186920
+
Arg
CCT
[ENA]
¡û
>W1710539581
FNVM01000013
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
187627
187701
+
Arg
CCT
[ENA]
¡û
>W1710542725
FNZJ01000010
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
55742
55816
+
Arg
CCT
[ENA]
¡û
>W1710545317
FOBJ01000017
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
50994
50920
-
Arg
CCT
[ENA]
¡û
>W1710554311
FOII01000013
Betaproteobacteria
Variovorax sp. OV084 [FOII]
185303
185377
+
Arg
CCT
[ENA]
¡û
>W1710557167
FOKS01000014
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
187453
187527
+
Arg
CCT
[ENA]
¡û
>W1710558166
FOLP01000010
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
55742
55816
+
Arg
CCT
[ENA]
¡û
>W1710562288
FOOV01000028
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
27412
27338
-
Arg
CCT
[ENA]
¡û
>W1710571874
FOWG01000008
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
195786
195860
+
Arg
CCT
[ENA]
¡û
>W1710572135
FOWL01000010
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
54620
54694
+
Arg
CCT
[ENA]
¡û
>W1710573309
FOXJ01000008
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
235069
234995
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK