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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400274 (79 seq.)
>W1710785175
LJHQ01000010
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
2352
2278
-
Lys
TTT
[ENA]
¡û
>W1710858038
LMAR01000059
Alphaproteobacteria
Bosea thiooxidans [LMAR]
9045
8971
-
Lys
TTT
[ENA]
¡û
>W1710869488
LMJT01000023
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
192870
192796
-
Lys
TTT
[ENA]
¡û
>W1710869526
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
308523
308449
-
Lys
TTT
[ENA]
¡û
>W1710869653
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
964158
964232
+
Lys
TTT
[ENA]
¡û
>W1710879527
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
674837
674911
+
Lys
TTT
[ENA]
¡û
>W1710893376
LNER01000704
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
11229
11155
-
Lys
TTT
[ENA]
¡û
>W1711072944
LSIB01000092
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
81199
81125
-
Lys
TTT
[ENA]
¡û
>W1711073135
LSIG01000124
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
107545
107471
-
Lys
TTT
[ENA]
¡û
>W1711073297
LSIK01000170
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1711073803
LSIY01000036
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1711074519
LSJP01000388
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1711074619
LSJR01000445
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
25033
25107
+
Lys
TTT
[ENA]
¡û
>W1711074722
LSJU01000552
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1445
1371
-
Lys
TTT
[ENA]
¡û
>W1711074757
LSJV01000038
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
25365
25439
+
Lys
TTT
[ENA]
¡û
>W1711075584
LSKN01000252
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1711385489
MEEG01000278
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
75
1
-
Lys
TTT
[ENA]
¡û
>W1711502371
MKSQ01000007
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
233752
233826
+
Lys
TTT
[ENA]
¡û
>C171049986
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
2831376
2831302
-
Lys
TTT
-
¡û
>C171057760
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
4256390
4256316
-
Lys
TTT
-
¡û
>WENV180020307
FTCZ01001305
[FTCZ] metagenome; soil
10221
10147
-
Lys
TTT
[ENA]
¢þ
>WENV181227119
OFDN01001988
[OFDN] hot springs metagenome; Water
3162
3236
+
Lys
TTT
[ENA]
¢þ
>WENV181415166
OGCL01005089
[OGCL] hot springs metagenome; Hot spring water
3
77
+
Lys
TTT
[ENA]
¢þ
>WENV181415339
OGCL01008526
[OGCL] hot springs metagenome; Hot spring water
558
632
+
Lys
TTT
[ENA]
¢þ
>WENV183738417
PJUD01193551
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
229
155
-
Lys
TTT
[ENA]
¢þ
>WENV170012151
APMI01126689
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
753
679
-
Lys
TTT
[ENA]
¢þ
>WENV170012177
APMI01131034
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
624
698
+
Lys
TTT
[ENA]
¢þ
>WENV170012287
APMI01146976
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
15
89
+
Lys
TTT
[ENA]
¢þ
>WENV170680910
LFEF01033660
[LFEF] freshwater metagenome; waterbloom
153
79
-
Lys
TTT
[ENA]
¢þ
>WENV170712873
LNFM01019222
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7508
7434
-
Lys
TTT
[ENA]
¢þ
>WENV170713440
LNFM01031391
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4540
4614
+
Lys
TTT
[ENA]
¢þ
>WENV170714394
LNFM01071155
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
131
57
-
Lys
TTT
[ENA]
¢þ
>WENV171003179
NNBT01002165
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
26735
26809
+
Lys
TTT
[ENA]
¢þ
>WENV171003757
NNBV01000645
[NNBV] plant metagenome; symbiotic tissue sample KVS11
136380
136306
-
Lys
TTT
[ENA]
¢þ
>C181063215
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2877622
2877548
-
Lys
TTT
-
¡û
>C191014005
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1360489
1360563
+
Lys
TTT
-
¡û
>W141805329
JPKG01000072
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
43194
43120
-
Lys
TTT
[ENA]
¡û
>W141815825
JQJJ01000014
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
315742
315668
-
Lys
TTT
[ENA]
¡û
>W1910501744
FYAS01000054
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
92247
92321
+
Lys
TTT
[ENA]
¡û
>W1910635403
LNCQ01000022
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
423233
423159
-
Lys
TTT
[ENA]
¡û
>W1910840131
MZXT01000010
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
942490
942564
+
Lys
TTT
[ENA]
¡û
>W1910840182
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
1939067
1939141
+
Lys
TTT
[ENA]
¡û
>W1910847631
NBDP01000003
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
927221
927295
+
Lys
TTT
[ENA]
¡û
>W1810251997
PQFZ01000002
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
81715
81641
-
Lys
TTT
[ENA]
¡û
>W1810463367
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4820628
4820702
+
Lys
TTT
[ENA]
¡û
>W1810676903
QKMI01000008
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
244344
244270
-
Lys
TTT
[ENA]
¡û
>W1810735502
QOIO01000018
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
504
430
-
Lys
TTT
[ENA]
¡û
>W1810783312
QQTO01000020
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
153668
153594
-
Lys
TTT
[ENA]
¡û
>W1810783365
QQTP01000019
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
96722
96796
+
Lys
TTT
[ENA]
¡û
>W1511353034
JROW01000519
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
73
1
-
Lys
TTT
[ENA]
¡û
>C161070673
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1618036
1618110
+
Lys
TTT
[Ensembl]
¡û
>W1610550615
JXTJ01000004
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
132973
132899
-
Lys
TTT
[ENA]
¡û
>W1610617159
LGSZ01000022
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
151393
151319
-
Lys
TTT
[ENA]
¡û
>W1610648981
LJHQ01000010
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
2352
2278
-
Lys
TTT
[ENA]
¡û
>W1610720384
LMAR01000059
Alphaproteobacteria
Bosea thiooxidans [LMAR]
9045
8971
-
Lys
TTT
[ENA]
¡û
>W1610731834
LMJT01000023
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
192870
192796
-
Lys
TTT
[ENA]
¡û
>W1610731872
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
308523
308449
-
Lys
TTT
[ENA]
¡û
>W1610731999
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
964158
964232
+
Lys
TTT
[ENA]
¡û
>W1610741873
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
674837
674911
+
Lys
TTT
[ENA]
¡û
>W1610753642
LNER01000704
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
11229
11155
-
Lys
TTT
[ENA]
¡û
>W1610912204
LSIB01000092
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
81199
81125
-
Lys
TTT
[ENA]
¡û
>W1610912440
LSIG01000124
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
107545
107471
-
Lys
TTT
[ENA]
¡û
>W1610912602
LSIK01000170
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1610913108
LSIY01000036
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1610913824
LSJP01000388
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1610913924
LSJR01000445
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
25033
25107
+
Lys
TTT
[ENA]
¡û
>W1610914027
LSJU01000552
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1445
1371
-
Lys
TTT
[ENA]
¡û
>W1610914062
LSJV01000038
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
25365
25439
+
Lys
TTT
[ENA]
¡û
>W1610914889
LSKN01000252
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25035
25109
+
Lys
TTT
[ENA]
¡û
>W1710064197
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
5194675
5194601
-
Lys
TTT
[ENA]
¡û
>W1710515705
FNBZ01000006
Alphaproteobacteria
Bosea robiniae [FNBZ]
320975
321049
+
Lys
TTT
[ENA]
¡û
>W1710538938
FNUY01000002
Alphaproteobacteria
Bosea lathyri [FNUY]
299507
299433
-
Lys
TTT
[ENA]
¡û
>W1710544004
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
331806
331880
+
Lys
TTT
[ENA]
¡û
>W1710556976
FOKP01000001
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
191847
191773
-
Lys
TTT
[ENA]
¡û
>W1710564903
FOQV01000001
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
809434
809360
-
Lys
TTT
[ENA]
¡û
>W1710596435
FTMO01000003
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
94138
94212
+
Lys
TTT
[ENA]
¡û
>W1710603278
FUYX01000003
Alphaproteobacteria
Bosea thiooxidans [FUYX]
99418
99344
-
Lys
TTT
[ENA]
¡û
>W1710660450
JXTJ01000004
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
132973
132899
-
Lys
TTT
[ENA]
¡û
>W1710742773
LGSZ01000022
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
151393
151319
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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