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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400276 (64 seq.)
>W1710871482
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
358298
358224
-
Gln
TTG
[ENA]
¡û
>W1710871517
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1145843
1145769
-
Gln
TTG
[ENA]
¡û
>W1711513410
MLFR01000038
Gammaproteobacteria
Pantoea rwandensis [MLFR]
48216
48290
+
Gln
TTG
[ENA]
¡û
>W1711680215
MRWD01000071
Gammaproteobacteria
Rouxiella silvae [MRWD]
25765
25839
+
Gln
TTG
[ENA]
¡û
>W1711680216
MRWD01000071
Gammaproteobacteria
Rouxiella silvae [MRWD]
25907
25981
+
Gln
TTG
[ENA]
¡û
>W1711688904
MSDP01000005
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
110720
110646
-
Gln
CTG
[ENA]
¡û
>WENV170708575
LNAP01098709
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
369
295
-
Gln
TTG
[ENA]
¢þ
>C181015837
CP014137
Gammaproteobacteria
Brenneria goodwinii FRB141 [CP014137]
2758130
2758204
+
Gln
TTG
-
¡û
>C181035746
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
2404364
2404438
+
Gln
TTG
-
¡û
>C191087403
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3477626
3477700
+
Gln
TTG
-
¡û
>C191126440
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3398844
3398918
+
Gln
TTG
-
¡û
>C191126516
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3399541
3399615
+
Gln
TTG
-
¡û
>C191126593
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3517008
3517082
+
Gln
TTG
-
¡û
>C191151743
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1171228
1171302
+
Gln
TTG
-
¡û
>C191175049
CP040095
Gammaproteobacteria
Pantoea sp. SO10 [CP040095]
1236533
1236459
-
Gln
TTG
-
¡û
>W141710418
JMPJ01000026
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
50911
50837
-
Gln
TTG
[ENA]
¡û
>W141710726
JMPO01000114
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
61592
61666
+
Gln
TTG
[ENA]
¡û
>W141816165
JQJR01000003
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
405714
405640
-
Gln
TTG
[ENA]
¡û
>W1910649374
LXYV01000788
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
331269
331343
+
Gln
TTG
[ENA]
¡û
>W1910655853
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
32400
32326
-
Gln
TTG
[ENA]
¡û
>W1910696195
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
894209
894283
+
Gln
TTG
[ENA]
¡û
>W1910750402
MJIB01000005
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
419162
419236
+
Gln
TTG
[ENA]
¡û
>W1910751212
MJLX01000041
Gammaproteobacteria
Brenneria goodwinii FRB141 [MJLX]
25445
25519
+
Gln
TTG
[ENA]
¡û
>W1910751292
MJLY01000044
Gammaproteobacteria
Brenneria goodwinii FRB171 [MJLY]
25569
25643
+
Gln
TTG
[ENA]
¡û
>W1910751328
MJLZ01000018
Gammaproteobacteria
Brenneria alni NCPPB 3934 [MJLZ]
46191
46265
+
Gln
TTG
[ENA]
¡û
>W1911239328
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2091275
2091201
-
Gln
TTG
[ENA]
¡û
>W1911496815
OCMY01000001
Gammaproteobacteria
Pantoea floridensis JKS000234 [OCMY]
666862
666936
+
Gln
TTG
[ENA]
¡û
>W1911654293
QDKH01000027
Gammaproteobacteria
Brenneria sp. CFCC 11842 [QDKH]
75963
76037
+
Gln
TTG
[ENA]
¡û
>W1911686163
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
1879799
1879725
-
Gln
TTG
[ENA]
¡û
>W1911693617
QLTF01000004
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
273337
273411
+
Gln
TTG
[ENA]
¡û
>W1911824515
QZWI01000001
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
619141
619215
+
Gln
TTG
[ENA]
¡û
>W1810071407
PEES01000001
Gammaproteobacteria
Enterobacteriaceae bacterium JKS000233 [PEES]
2406190
2406264
+
Gln
TTG
[ENA]
¡û
>W1810147257
PIQI01000023
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
297986
297912
-
Gln
TTG
[ENA]
¡û
>W1810149963
PITQ01000001
Gammaproteobacteria
Rahnella sp. AA [PITQ]
1017949
1017875
-
Gln
TTG
[ENA]
¡û
>W1810177759
PJRT01000025
Gammaproteobacteria
Pantoea endophytica 596 [PJRT]
147688
147762
+
Gln
TTG
[ENA]
¡û
>W1810239905
PPSR01000001
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
221415
221489
+
Gln
TTG
[ENA]
¡û
>W1810444230
PZJN01000003
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
603805
603879
+
Gln
CTG
[ENA]
¡û
>W1810444428
PZJQ01000004
Gammaproteobacteria
Salinicola halimionae CPA60 [PZJQ]
968921
968847
-
Gln
CTG
[ENA]
¡û
>W1810543406
QDKI01000011
Gammaproteobacteria
Brenneria roseae subsp. roseae LMG 27714 [QDKI]
156429
156503
+
Gln
TTG
[ENA]
¡û
>W1810676943
QKMJ01000001
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
113554
113480
-
Gln
TTG
[ENA]
¡û
>W1810744578
QOVA01000001
Gammaproteobacteria
Edaphovirga cremea DSM 105170 [QOVA]
361880
361806
-
Gln
TTG
[ENA]
¡û
>W1810744579
QOVA01000001
Gammaproteobacteria
Edaphovirga cremea DSM 105170 [QOVA]
361757
361683
-
Gln
TTG
[ENA]
¡û
>C151051557
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
3566297
3566371
+
Gln
TTG
[Ensembl]
¡û
>W1510092947
CEFO01000001
Gammaproteobacteria
Enterobacter ludwigii EnVs6 [CEFO]
714127
714201
+
Gln
TTG
[ENA]
¡û
>W1510093170
CEFQ01000010
Gammaproteobacteria
Enterobacter ludwigii EnVs2 [CEFQ]
296653
296579
-
Gln
TTG
[ENA]
¡û
>W1510093249
CEFR01000091
Gammaproteobacteria
Enterobacter ludwigii LecVs2 [CEFR]
304217
304143
-
Gln
TTG
[ENA]
¡û
>W1510148566
CGIG01000001
Gammaproteobacteria
Brenneria goodwinii OBR1 [CGIG]
136525
136599
+
Gln
TTG
[ENA]
¡û
>C11118333
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3451205
3451279
+
Gln
TTG
[Ensembl]
¡û
>W1511433714
JUHL01000002
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
156823
156897
+
Gln
TTG
[ENA]
¡û
>W1511433799
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
197499
197425
-
Gln
TTG
[ENA]
¡û
>W1511547709
JZRD01000039
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
100109
100183
+
Gln
TTG
[ENA]
¡û
>W1511547943
JZRH01000033
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
39138
39064
-
Gln
TTG
[ENA]
¡û
>W1511699707
LGIS01000012
Gammaproteobacteria
Pantoea sp. RIT-PI-b [LGIS]
328730
328656
-
Gln
TTG
[ENA]
¡û
>C121009624
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3440345
3440419
+
Gln
TTG
[Ensembl]
¡û
>C121012479
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
3517340
3517414
+
Gln
TTG
[Ensembl]
¡û
>W1610053293
BBOD01000048
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
32710
32784
+
Gln
TTG
[ENA]
¡û
>W121062072
AJHJ01000011
Gammaproteobacteria
Serratia sp. M24T3 [AJHJ]
59619
59693
+
Gln
TTG
[ENA]
¡û
>W121084826
AKIT01000065
Gammaproteobacteria
Pantoea sp. YR343 [AKIT]
26794
26868
+
Gln
TTG
[ENA]
¡û
>W121084871
AKIU01000055
Gammaproteobacteria
Pantoea sp. GM01 [AKIU]
97796
97870
+
Gln
TTG
[ENA]
¡û
>W1610733828
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
358298
358224
-
Gln
TTG
[ENA]
¡û
>W1610733863
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1145843
1145769
-
Gln
TTG
[ENA]
¡û
>W1710049671
BBOD01000048
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
32710
32784
+
Gln
TTG
[ENA]
¡û
>W1710566690
FOSD01000008
Gammaproteobacteria
Pantoea symbiotica YR512 [FOSD]
256052
255978
-
Gln
TTG
[ENA]
¡û
>W1710578724
FPBU01000008
Gammaproteobacteria
Pantoea sp. YR525 [FPBU]
256052
255978
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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