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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400364 (86 seq.)
>W1710926997
LOEW01000226
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
14074
14000
-
Asn
GTT
[ENA]
¡û
>W1711312228
MASS01000005
Bacillota
Desulfosporosinus sp. BG [MASS]
71143
71069
-
Asn
GTT
[ENA]
¡û
>W1711312285
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
6533
6607
+
Asn
GTT
[ENA]
¡û
>W1711510596
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
6173
6247
+
Asn
GTT
[ENA]
¡û
>W1711510599
MLBF01000099
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
2306
2232
-
Asn
GTT
[ENA]
¡û
>W1711926257
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6775
6849
+
Asn
GTT
[ENA]
¡û
>W1711926289
NADJ01000038
Bacillota
Desulfosporosinus sp. FKB [NADJ]
121432
121358
-
Asn
GTT
[ENA]
¡û
>W1711926299
NADJ01000040
Bacillota
Desulfosporosinus sp. FKB [NADJ]
229026
228952
-
Asn
GTT
[ENA]
¡û
>W1711932743
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1016
942
-
Asn
GTT
[ENA]
¡û
>W1711932748
NAHZ01000028
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
394158
394084
-
Asn
GTT
[ENA]
¡û
>W1711932771
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
184297
184371
+
Asn
GTT
[ENA]
¡û
>C008038
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2679838
2679764
-
Asn
GTT
[Ensembl]
¡û
>WENV183671648
ORJL011085100
[ORJL] groundwater metagenome; groundwater
4103
4029
-
Asn
GTT
[ENA]
¢þ
>WENV170019911
BBPE01001382
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1701
1627
-
Asn
GTT
[ENA]
¢þ
>WENV170021318
BBPF01006054
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
71
145
+
Asn
GTT
[ENA]
¢þ
>WENV170021939
BBPG01005454
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
71
145
+
Asn
GTT
[ENA]
¢þ
>WENV170658864
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
1488
1414
-
Asn
GTT
[ENA]
¢þ
>WENV170658870
JUEG02001270
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
222846
222772
-
Asn
GTT
[ENA]
¢þ
>WENV170658875
JUEG02001273
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
2523
2597
+
Asn
GTT
[ENA]
¢þ
>WENV170658895
JUEG02001294
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
300890
300816
-
Asn
GTT
[ENA]
¢þ
>WENV170784409
MCHG01004983
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
1099
1025
-
Asn
GTT
[ENA]
¢þ
>W09105156
AAOP01000012
Bacillota
Desulforamulus reducens MI-1 [AAOP]
50
124
+
Asn
GTT
[ENA]
¡û
>W09108856
ABTQ01000046
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
26786
26860
+
Asn
GTT
[ENA]
¡û
>W09108885
ABTQ01000104
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
600
674
+
Asn
GTT
[ENA]
¡û
>W09126264
ACJM01000032
Bacillota
Dethiobacter alkaliphilus AHT 1 [ACJM]
822
896
+
Asn
GTT
[ENA]
¡û
>W1910004961
AWVY01000035
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
31135
31209
+
Asn
GTT
[ENA]
¡û
>W1910004970
AWVY01000043
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
220
294
+
Asn
GTT
[ENA]
¡û
>W1810047163
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
5500
5574
+
Asn
GTT
[ENA]
¡û
>W1810047182
OMOF01000204
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
3691
3617
-
Asn
GTT
[ENA]
¡û
>C151016323
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2540248
2540174
-
Asn
GTT
[Ensembl]
¡û
>C151016338
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2173963
2173889
-
Asn
GTT
[Ensembl]
¡û
>C151016352
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2172206
2172132
-
Asn
GTT
[Ensembl]
¡û
>C10104791
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
276394
276468
+
Asn
GTT
[Ensembl]
¡û
>C10104841
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
3231463
3231389
-
Asn
GTT
[Ensembl]
¡û
>C11107317
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
257256
257330
+
Asn
GTT
[Ensembl]
¡û
>C11107331
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
1204711
1204785
+
Asn
GTT
[Ensembl]
¡û
>W1511187120
JMGA01000028
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
5541
5467
-
Asn
GTT
[ENA]
¡û
>W1511187153
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
22572
22646
+
Asn
GTT
[ENA]
¡û
>W1511187165
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
1226
1300
+
Asn
GTT
[ENA]
¡û
>W1511327362
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2474
2400
-
Asn
GTT
[ENA]
¡û
>W1511327373
JQID01000118
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
41250
41324
+
Asn
GTT
[ENA]
¡û
>W1511430056
JUEE01000131
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
23510
23436
-
Asn
GTT
[ENA]
¡û
>W1511430067
JUEE01000238
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
9763
9689
-
Asn
GTT
[ENA]
¡û
>W1511533665
JYNH01000002
Bacillota
Desulfosporosinus sp. I2 [JYNH]
114831
114905
+
Asn
GTT
[ENA]
¡û
>W1511533703
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
10091
10165
+
Asn
GTT
[ENA]
¡û
>W1511533709
JYNH01000173
Bacillota
Desulfosporosinus sp. I2 [JYNH]
1597
1671
+
Asn
GTT
[ENA]
¡û
>W1511564552
LADV01000038
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
20248
20174
-
Asn
GTT
[ENA]
¡û
>W1511564562
LADV01000142
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
72
146
+
Asn
GTT
[ENA]
¡û
>W1511644715
LDXJ01000036
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
22940
23014
+
Asn
GTT
[ENA]
¡û
>W1511645996
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70196
70122
-
Asn
GTT
[ENA]
¡û
>W1511646013
LDZY01000006
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
34524
34450
-
Asn
GTT
[ENA]
¡û
>W1511646047
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5535
5609
+
Asn
GTT
[ENA]
¡û
>W11177248
AGAF01000045
Bacillota
Desulfosporosinus sp. OT [AGAF]
6716
6790
+
Asn
GTT
[ENA]
¡û
>W11177302
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
1035
961
-
Asn
GTT
[ENA]
¡û
>W11181314
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
954474
954548
+
Asn
GTT
[ENA]
¡û
>W11181329
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
111580
111506
-
Asn
GTT
[ENA]
¡û
>W11181378
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1381
1307
-
Asn
GTT
[ENA]
¡û
>W11181395
AGJB01000003
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
248318
248392
+
Asn
GTT
[ENA]
¡û
>W11181435
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
686
612
-
Asn
GTT
[ENA]
¡û
>C121005937
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
108751
108825
+
Asn
GTT
[Ensembl]
¡û
>C121005966
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
5121623
5121549
-
Asn
GTT
[Ensembl]
¡û
>C121014777
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
102743
102817
+
Asn
GTT
[Ensembl]
¡û
>C121014813
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
4112734
4112660
-
Asn
GTT
[Ensembl]
¡û
>C121014827
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3014622
3014548
-
Asn
GTT
[Ensembl]
¡û
>C121014854
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
104077
104151
+
Asn
GTT
[Ensembl]
¡û
>C121014882
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
4122629
4122555
-
Asn
GTT
[Ensembl]
¡û
>C121014890
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2952387
2952313
-
Asn
GTT
[Ensembl]
¡û
>W121010345
AGJE01000006
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
89678
89604
-
Asn
GTT
[ENA]
¡û
>W121010379
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
65261
65335
+
Asn
GTT
[ENA]
¡û
>W121010444
AGJG01000004
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
28945
29019
+
Asn
GTT
[ENA]
¡û
>W121010466
AGJG01000012
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133538
133464
-
Asn
GTT
[ENA]
¡û
>W121010497
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
3853
3927
+
Asn
GTT
[ENA]
¡û
>W121036127
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
125260
125334
+
Asn
GTT
[ENA]
¡û
>W121036166
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1195706
1195632
-
Asn
GTT
[ENA]
¡û
>W121036174
AHLV01000003
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
910831
910757
-
Asn
GTT
[ENA]
¡û
>W121036180
AHLV01000003
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
79028
78954
-
Asn
GTT
[ENA]
¡û
>C131003277
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
2975284
2975210
-
Asn
GTT
[Ensembl]
¡û
>C131003244
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1802564
1802638
+
Asn
GTT
[Ensembl]
¡û
>C131003259
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1806005
1806079
+
Asn
GTT
[Ensembl]
¡û
>W1610784539
LOEW01000226
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
14074
14000
-
Asn
GTT
[ENA]
¡û
>W1710516454
FNCP01000001
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
287273
287199
-
Asn
GTT
[ENA]
¡û
>W1710516491
FNCP01000032
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
48500
48426
-
Asn
GTT
[ENA]
¡û
>W1710516515
FNCP01000054
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
1345
1271
-
Asn
GTT
[ENA]
¡û
>W1710586638
FQXJ01000004
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
345327
345253
-
Asn
GTT
[ENA]
¡û
>W1710586657
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
29711
29785
+
Asn
GTT
[ENA]
¡û
>W1710590064
FRAR01000024
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
77423
77497
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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