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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400371 (57 seq.)
>W1710927109
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
36795
36721
-
Cys
GCA
[ENA]
¡û
>W1711071255
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
484430
484356
-
Cys
GCA
[ENA]
¡û
>W1711076503
LSLJ01000001
Bacillota
Sporomusa sphaeroides DSM 2875 [LSLJ]
2312825
2312751
-
Cys
GCA
[ENA]
¡û
>W1711312264
MASS01000046
Bacillota
Desulfosporosinus sp. BG [MASS]
1241
1315
+
Cys
GCA
[ENA]
¡û
>W1711312269
MASS01000047
Bacillota
Desulfosporosinus sp. BG [MASS]
30901
30827
-
Cys
GCA
[ENA]
¡û
>W1711342460
MCHF01000040
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
23157
23083
-
Cys
GCA
[ENA]
¡û
>C000793
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1715478
1715552
+
Cys
GCA
[Ensembl]
¡û
>C000806
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1843869
1843943
+
Cys
GCA
[Ensembl]
¡û
>w010404
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2375
2449
+
Cys
GCA
[ENA]
¡û
>WENV180262358
OBEQ011380160
[OBEQ] groundwater metagenome; groundwater
1173
1099
-
Cys
GCA
[ENA]
¢þ
>WENV180356002
OBNJ01016128
[OBNJ] sediment metagenome; sediment
88
162
+
Cys
GCA
[ENA]
¢þ
>W141088281
AUUR01000065
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
2165
2091
-
Cys
GCA
[ENA]
¡û
>W141246567
CANE01000029
Bacillota
Dehalobacter restrictus E1 [CANE]
8683
8757
+
Cys
GCA
[ENA]
¡û
>WENV183745613
POVV01000156
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
1763
1689
-
Cys
GCA
[ENA]
¢þ
>WENV183745887
POVV01001565
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
7100
7026
-
Cys
GCA
[ENA]
¢þ
>WENV183746253
POVV01019005
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
769
695
-
Cys
GCA
[ENA]
¢þ
>WENV170003519
AGTN01366834
[AGTN] bioreactor metagenome; poplar biomass
100
26
-
Cys
GCA
[ENA]
¢þ
>WENV170019369
BBPD01009241
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1313
1239
-
Cys
GCA
[ENA]
¢þ
>WENV170020554
BBPE01011600
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2139
2065
-
Cys
GCA
[ENA]
¢þ
>WENV170658841
JUEG02001172
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
561
635
+
Cys
GCA
[ENA]
¢þ
>WENV170658848
JUEG02001194
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
27613
27539
-
Cys
GCA
[ENA]
¢þ
>WENV170658893
JUEG02001293
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
22596
22670
+
Cys
GCA
[ENA]
¢þ
>WENV170661754
JXWV01109166
[JXWV] soil metagenome; rice field; organic FYM Plot
294
368
+
Cys
GCA
[ENA]
¢þ
>WENV170674720
LCWY01000953
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
2535
2461
-
Cys
GCA
[ENA]
¢þ
>WENV170784235
MCHG01000181
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
29113
29039
-
Cys
GCA
[ENA]
¢þ
>WENV170921315
MDTG01011984
[MDTG] marine metagenome; seawater
134
208
+
Cys
GCA
[ENA]
¢þ
>WENV170967662
MTKW01002749
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
416
342
-
Cys
GCA
[ENA]
¢þ
>W1910200230
FCOW01000012
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
111640
111714
+
Cys
GCA
[ENA]
¡û
>W1910639080
LSLL01000034
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
16489
16563
+
Cys
GCA
[ENA]
¡û
>W1910647183
LXPC01000019
Bacillota
Dehalobacter sp. MCB1 [LXPC]
8991
9065
+
Cys
GCA
[ENA]
¡û
>W1810047199
OMOF01000956
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
1601
1527
-
Cys
GCA
[ENA]
¡û
>W1511187127
JMGA01000040
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
26942
26868
-
Cys
GCA
[ENA]
¡û
>W1511187140
JMGA01000060
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
1109
1183
+
Cys
GCA
[ENA]
¡û
>W1511327369
JQID01000107
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2552
2626
+
Cys
GCA
[ENA]
¡û
>C11120617
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
252727
252801
+
Cys
GCA
[Ensembl]
¡û
>W1511430064
JUEE01000168
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
26209
26135
-
Cys
GCA
[ENA]
¡û
>W1511533688
JYNH01000095
Bacillota
Desulfosporosinus sp. I2 [JYNH]
4917
4991
+
Cys
GCA
[ENA]
¡û
>W1511644703
LDXJ01000015
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
814
740
-
Cys
GCA
[ENA]
¡û
>W11177276
AGAF01000180
Bacillota
Desulfosporosinus sp. OT [AGAF]
1229
1303
+
Cys
GCA
[ENA]
¡û
>W11177286
AGAF01000222
Bacillota
Desulfosporosinus sp. OT [AGAF]
23017
22943
-
Cys
GCA
[ENA]
¡û
>W11181358
AGJA01000014
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1012
1086
+
Cys
GCA
[ENA]
¡û
>W11181364
AGJA01000015
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
5293
5367
+
Cys
GCA
[ENA]
¡û
>C121005945
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
118062
118136
+
Cys
GCA
[Ensembl]
¡û
>C121005980
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
3773557
3773483
-
Cys
GCA
[Ensembl]
¡û
>C121014784
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
112753
112827
+
Cys
GCA
[Ensembl]
¡û
>C121014798
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
1636759
1636833
+
Cys
GCA
[Ensembl]
¡û
>W121036134
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
135104
135178
+
Cys
GCA
[ENA]
¡û
>W121036168
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1195531
1195457
-
Cys
GCA
[ENA]
¡û
>C131008601
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2079633
2079559
-
Cys
GCA
[Ensembl]
¡û
>W1610784651
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
36795
36721
-
Cys
GCA
[ENA]
¡û
>W1610910515
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
484430
484356
-
Cys
GCA
[ENA]
¡û
>W1710515444
FNBU01000012
Bacillota
Sporolituus thermophilus DSM 23256 [FNBU]
13393
13319
-
Cys
GCA
[ENA]
¡û
>W1710516501
FNCP01000038
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
4085
4159
+
Cys
GCA
[ENA]
¡û
>W1710516525
FNCP01000059
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
748
822
+
Cys
GCA
[ENA]
¡û
>W1710547428
FOCY01000012
Bacillota
Megamonas sp. Calf98-2 [FOCY]
32844
32918
+
Cys
GCA
[ENA]
¡û
>W1710586664
FQXJ01000028
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
4083
4009
-
Cys
GCA
[ENA]
¡û
>W1710586673
FQXJ01000036
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
27460
27386
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK