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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400386 (100 seq.)
>W1710890956
LNCI01000002
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
169726
169652
-
Gln
TTG
[ENA]
¡û
>W1710922262
LOAS01000011
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
234355
234429
+
Gln
TTG
[ENA]
¡û
>W1710996660
LQBP01000016
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
7655
7581
-
Gln
TTG
[ENA]
¡û
>W1711124598
LUKH01000020
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
77639
77565
-
Gln
TTG
[ENA]
¡û
>W1711167010
LVVZ01000009
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
11878
11952
+
Gln
TTG
[ENA]
¡û
>W131229356
AUGS01000022
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
11437
11511
+
Gln
TTG
[ENA]
¡û
>W131231323
AUIJ01000020
Alphaproteobacteria
Sediminimonas qiaohouensis DSM 21189 [AUIJ]
44668
44742
+
Gln
TTG
[ENA]
¡û
>W1711695313
MSIT01000003
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
132815
132889
+
Gln
TTG
[ENA]
¡û
>W1712085162
NHTQ01000006
Alphaproteobacteria
Rhodobacteraceae bacterium WFHF2C18 [NHTQ]
88831
88905
+
Gln
TTG
[ENA]
¡û
>C171035309
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
3370234
3370160
-
Gln
TTG
-
¡û
>w012759
AAMT01000001
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
191808
191884
+
Gln
TTG
[ENA]
¡û
>WENV180043267
LQAH01018197
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
421
495
+
Gln
TTG
[ENA]
¢þ
>WENV180105429
OAPD01053221
[OAPD] marine metagenome; 2010
174
248
+
Gln
TTG
[ENA]
¢þ
>WENV180107269
OAPF01084790
[OAPF] marine metagenome; ENVO:00002010
431
357
-
Gln
TTG
[ENA]
¢þ
>WENV180294030
OBIY01011051
[OBIY] beach sand metagenome; beach sand
1058
984
-
Gln
TTG
[ENA]
¢þ
>W141065785
AQQY01000005
Alphaproteobacteria
Actibacterium atlanticum 22II-S11-z10 [AQQY]
6281
6207
-
Gln
TTG
[ENA]
¡û
>W141151693
AXBG01000013
Alphaproteobacteria
Sedimentitalea nanhaiensis DSM 24252 [AXBG]
759775
759849
+
Gln
TTG
[ENA]
¡û
>WENV183704659
PDWI01000466
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
105941
106015
+
Gln
TTG
[ENA]
¢þ
>WENV183710384
PDWI01045358
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1265
1191
-
Gln
TTG
[ENA]
¢þ
>WENV183710684
PDWI01051598
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22
96
+
Gln
TTG
[ENA]
¢þ
>WENV183710729
PDWI01052515
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2466
2540
+
Gln
TTG
[ENA]
¢þ
>WENV183712427
PDWI01099550
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2075
2149
+
Gln
TTG
[ENA]
¢þ
>WENV183716768
PDWJ01000174
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15874
15800
-
Gln
TTG
[ENA]
¢þ
>WENV183716964
PDWJ01000316
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
71684
71758
+
Gln
TTG
[ENA]
¢þ
>WENV183720592
PDWJ01038673
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
22
96
+
Gln
TTG
[ENA]
¢þ
>WENV183720593
PDWJ01038690
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2602
2528
-
Gln
TTG
[ENA]
¢þ
>WENV170013085
ATLU01000001
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
42701
42627
-
Gln
TTG
[ENA]
¢þ
>WENV170016470
AZIK01007474
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
467
393
-
Gln
TTG
[ENA]
¢þ
>WENV170228992
CEQG01061024
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
200
126
-
Gln
TTG
[ENA]
¢þ
>WENV170477669
CEVJ01094040
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1028
954
-
Gln
TTG
[ENA]
¢þ
>WENV170479088
CEVK01168243
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
488
414
-
Gln
TTG
[ENA]
¢þ
>WENV170487410
CEVO01053776
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2142
2216
+
Gln
TTG
[ENA]
¢þ
>WENV170634339
FYBJ01000245
[FYBJ] marine metagenome; marine
14959
14885
-
Gln
TTG
[ENA]
¢þ
>WENV170634504
FYBJ01001544
[FYBJ] marine metagenome; marine
2688
2614
-
Gln
TTG
[ENA]
¢þ
>W141464067
JFKE01000002
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
88684
88610
-
Gln
TTG
[ENA]
¡û
>C181052328
CP021404
Alphaproteobacteria
Pacificitalea manganoxidans DY25 [CP021404]
2941057
2941131
+
Gln
TTG
-
¡û
>C191020029
CP022303
Alphaproteobacteria
Thalassococcus sp. S3 [CP022303]
3630001
3630075
+
Gln
TTG
-
¡û
>C191083120
CP031946
Alphaproteobacteria
Ruegeria sp. AD91A [CP031946]
179707
179633
-
Gln
TTG
-
¡û
>C191141127
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
3102025
3102099
+
Gln
TTG
-
¡û
>C191158504
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
819078
819004
-
Gln
TTG
-
¡û
>W09112106
ABXM01000012
Alphaproteobacteria
Ruegeria sp. R11 [ABXM]
151566
151492
-
Gln
TTG
[ENA]
¡û
>W09118392
ACCW01000033
Alphaproteobacteria
Rhodobacteraceae bacterium KLH11 [ACCW]
81554
81480
-
Gln
TTG
[ENA]
¡û
>W09132597
ACNX01000035
Alphaproteobacteria
Ruegeria lacuscaerulensis ITI-1157 [ACNX]
60467
60393
-
Gln
TTG
[ENA]
¡û
>W141804433
JPHU01000008
Alphaproteobacteria
Parvularcula oceani [JPHU]
77186
77260
+
Gln
TTG
[ENA]
¡û
>W141813570
JQEY01000013
Alphaproteobacteria
Palleronia rufa MOLA 401 [JQEY]
14088
14014
-
Gln
TTG
[ENA]
¡û
>W141813585
JQEZ01000001
Alphaproteobacteria
Ruegeria halocynthiae [JQEZ]
1094081
1094155
+
Gln
TTG
[ENA]
¡û
>W1910442850
FWFO01000001
Alphaproteobacteria
Falsiruegeria litorea R37 CECT 7639 [FWFO]
1014717
1014643
-
Gln
TTG
[ENA]
¡û
>W1910442880
FWFP01000002
Alphaproteobacteria
Ruegeria meonggei CECT 8411 [FWFP]
392826
392900
+
Gln
TTG
[ENA]
¡û
>C141008357
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
2782489
2782563
+
Gln
TTG
[Ensembl]
¡û
>W1910499027
FXXP01000002
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
1440892
1440818
-
Gln
TTG
[ENA]
¡û
>W1910499055
FXXQ01000003
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
290358
290432
+
Gln
TTG
[ENA]
¡û
>W1910499812
FXYG01000001
Alphaproteobacteria
Ruegeria arenilitoris CECT 8715 [FXYG]
1412993
1413067
+
Gln
TTG
[ENA]
¡û
>W1910989657
NKQT01000001
Alphaproteobacteria
Pseudovibrio exalbescens COD 22 [NKQT]
1129388
1129314
-
Gln
TTG
[ENA]
¡û
>W1911237246
NSBU01000007
Alphaproteobacteria
Actibacterium pelagium JN33 [NSBU]
103604
103530
-
Gln
TTG
[ENA]
¡û
>W1911535587
OMKW01000003
Alphaproteobacteria
Pontivivens insulae CeCT 8812 [OMKW]
322067
321993
-
Gln
TTG
[ENA]
¡û
>W1911539823
ONZG01000004
Alphaproteobacteria
Falsiruegeria mediterranea M15O_3 CECT 7615 [ONZG]
44247
44173
-
Gln
TTG
[ENA]
¡û
>W1911582642
PHNT01000018
Alphaproteobacteria
Roseovarius salinarum N53 [PHNT]
15124
15050
-
Gln
TTG
[ENA]
¡û
>W1810364327
PVTD01000002
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
837176
837250
+
Gln
TTG
[ENA]
¡û
>W1810365074
PVTT01000001
Alphaproteobacteria
Hasllibacter halocynthiae DSM 29318 [PVTT]
1316169
1316243
+
Gln
TTG
[ENA]
¡û
>W1810464060
QAAA01000054
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
948
1022
+
Gln
TTG
[ENA]
¡û
>W1810578025
QEOS01000006
Alphaproteobacteria
Phaeobacter sp. JL2872 JL2872 [QEOS]
221509
221435
-
Gln
TTG
[ENA]
¡û
>W1810580441
QETF01000004
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
3216
3142
-
Gln
TTG
[ENA]
¡û
>W1810685932
QKZQ01000031
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
717
643
-
Gln
TTG
[ENA]
¡û
>W1810733766
QOHR01000025
Alphaproteobacteria
Rhodosalinus sediminis WDN1C137 [QOHR]
424
350
-
Gln
TTG
[ENA]
¡û
>W1810787226
QRDO01000003
Alphaproteobacteria
Pontivivens insulae DSM 103361 [QRDO]
322029
321955
-
Gln
TTG
[ENA]
¡û
>W1510650458
CVQZ01000030
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
39254
39328
+
Gln
TTG
[ENA]
¡û
>W1510650724
CVRL01000014
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
12842
12768
-
Gln
TTG
[ENA]
¡û
>W1510650791
CVRM01000031
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
39254
39328
+
Gln
TTG
[ENA]
¡û
>W1511325040
JQFU01000057
Alphaproteobacteria
Rhodovulum sp. NI22 [JQFU]
20819
20745
-
Gln
TTG
[ENA]
¡û
>W1511482923
JWLJ01000001
Alphaproteobacteria
Ruegeria sp. ANG-R [JWLJ]
104063
103989
-
Gln
TTG
[ENA]
¡û
>W1511482978
JWLK01000006
Alphaproteobacteria
Ruegeria sp. ANG-S4 [JWLK]
49223
49149
-
Gln
TTG
[ENA]
¡û
>W1511518777
JXYH01000006
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
101718
101792
+
Gln
TTG
[ENA]
¡û
>W1511583796
LAUK01000002
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
39202
39276
+
Gln
TTG
[ENA]
¡û
>W11152739
AEYW01000023
Alphaproteobacteria
Ruegeria conchae TW15 [AEYW]
82805
82879
+
Gln
TTG
[ENA]
¡û
>W1511686512
LFTY01000002
Alphaproteobacteria
Candidatus Rhodobacter lobularis symbiont of Oscarella lobularis [LFTY]
2378194
2378268
+
Gln
TTG
[ENA]
¡û
>C161029313
CP010869
Alphaproteobacteria
Actibacterium sp. EMB200-NS6 [CP010869]
2084724
2084798
+
Gln
TTG
[Ensembl]
¡û
>C161083470
CP015124
Alphaproteobacteria
Phaeobacter gallaeciensis JL2886 [CP015124]
3313667
3313741
+
Gln
TTG
-
¡û
>W1610018457
AQQX01000010
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
110799
110873
+
Gln
TTG
[ENA]
¡û
>W1610094947
CYUD01000001
Alphaproteobacteria
Ruegeria denitrificans CECT 5091 [CYUD]
168381
168307
-
Gln
TTG
[ENA]
¡û
>W1610526233
JPPB01000102
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
521
447
-
Gln
TTG
[ENA]
¡û
>W1610751352
LNCI01000002
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
169726
169652
-
Gln
TTG
[ENA]
¡û
>W1610779741
LOAS01000011
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
234355
234429
+
Gln
TTG
[ENA]
¡û
>W1610851317
LQBP01000016
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
7655
7581
-
Gln
TTG
[ENA]
¡û
>W1610935570
LUKH01000020
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
77639
77565
-
Gln
TTG
[ENA]
¡û
>W1710015412
AQQQ01000015
Alphaproteobacteria
Roseovarius sp. 22II1-1F6A [AQQQ]
49056
49130
+
Gln
TTG
[ENA]
¡û
>W1710015673
AQQX01000010
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
110799
110873
+
Gln
TTG
[ENA]
¡û
>W1710519002
FNEK01000020
Alphaproteobacteria
Aliiruegeria lutimaris [FNEK]
32019
31945
-
Gln
TTG
[ENA]
¡û
>W1710528923
FNNP01000008
Alphaproteobacteria
Ruegeria halocynthiae [FNNP]
11660
11586
-
Gln
TTG
[ENA]
¡û
>W1710548383
FODS01000023
Alphaproteobacteria
Salinihabitans flavidus [FODS]
21264
21190
-
Gln
TTG
[ENA]
¡û
>W1710559524
FOMS01000001
Alphaproteobacteria
Roseivivax sediminis [FOMS]
578510
578436
-
Gln
TTG
[ENA]
¡û
>W1710562471
FOOZ01000002
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
437599
437525
-
Gln
TTG
[ENA]
¡û
>W1710568491
FOTQ01000007
Alphaproteobacteria
Shimia aestuarii [FOTQ]
233961
234035
+
Gln
TTG
[ENA]
¡û
>W1710577517
FPAW01000011
Alphaproteobacteria
Sedimentitalea nanhaiensis [FPAW]
117245
117319
+
Gln
TTG
[ENA]
¡û
>W1710584243
FQVK01000014
Alphaproteobacteria
Ruegeria intermedia [FQVK]
35608
35534
-
Gln
TTG
[ENA]
¡û
>W1710587318
FQYJ01000012
Alphaproteobacteria
Ruegeria lacuscaerulensis ITI-1157 [FQYJ]
19724
19650
-
Gln
TTG
[ENA]
¡û
>W1710591403
FRBR01000017
Alphaproteobacteria
Roseovarius pacificus [FRBR]
52094
52168
+
Gln
TTG
[ENA]
¡û
>W1710594769
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
2781063
2781137
+
Gln
TTG
[ENA]
¡û
>W1710595112
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
3428661
3428587
-
Gln
TTG
[ENA]
¡û
>W1710609101
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
1023038
1022964
-
Gln
TTG
[ENA]
¡û
>W1710627534
JPPB01000102
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
521
447
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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