This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400569 (112 seq.)
>A171000729
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
1615153
1615225
+
His
GTG
-
¡û
>A171001151
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
475785
475712
-
His
GTG
-
¡û
>A171001299
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2289350
2289423
+
His
GTG
-
¡û
>A171002449
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1107033
1107105
+
His
GTG
-
¡û
>A171003055
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3314715
3314788
+
His
GTG
-
¡û
>A171003092
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1293671
1293744
+
His
GTG
-
¡û
>A171003171
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
3664503
3664576
+
His
GTG
-
¡û
>A171003505
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
290455
290382
-
His
GTG
-
¡û
>A171003725
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
357058
357130
+
His
GTG
-
¡û
>A171006904
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
615615
615688
+
His
GTG
-
¡û
>A171006965
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2439617
2439690
+
His
GTG
-
¡û
>A171006996
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
976372
976445
+
His
GTG
-
¡û
>A171007158
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2810632
2810705
+
His
GTG
-
¡û
>A171007254
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
1391950
1391878
-
His
GTG
-
¡û
>ENV08001190
ABMS01004115
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
34
106
+
His
GTG
[ENA]
¡û
>ENV08001853
ABOG01034836
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
104
32
-
His
GTG
[ENA]
¡û
>ENV08001877
ABOG01066532
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
85
11
-
His
GTG
[ENA]
¡û
>WENV170009151
APHM01021452
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
573
501
-
His
GTG
[ENA]
¢þ
>WENV170009171
APHM01021493
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
268314
268386
+
His
GTG
[ENA]
¢þ
>At0863
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2602554
2602625
+
His
GTG
[Ensembl]
¡û
>WENV170659941
JXWS01050057
[JXWS] soil metagenome; rice field; elevated CO2
236
308
+
His
GTG
[ENA]
¢þ
>WENV170679759
LFCJ01000290
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2126
2053
-
His
GTG
[ENA]
¢þ
>WENV170679873
LFCJ01001160
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
495
568
+
His
GTG
[ENA]
¢þ
>WENV170679879
LFCJ01001217
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
13577
13650
+
His
GTG
[ENA]
¢þ
>WENV170680049
LFCJ01003026
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1369
1296
-
His
GTG
[ENA]
¢þ
>WENV170681706
LFFM01002179
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
9012
8939
-
His
GTG
[ENA]
¢þ
>WENV170681815
LFFM01003049
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10088
10015
-
His
GTG
[ENA]
¢þ
>WENV170702891
LKMJ01004544
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7427
7500
+
His
GTG
[ENA]
¢þ
>WENV170702943
LKMJ01005029
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1724
1651
-
His
GTG
[ENA]
¢þ
>WENV170702990
LKMJ01005307
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6610
6537
-
His
GTG
[ENA]
¢þ
>WENV170703082
LKMJ01006331
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10717
10790
+
His
GTG
[ENA]
¢þ
>WENV170703429
LKMJ01011459
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3899
3972
+
His
GTG
[ENA]
¢þ
>WENV170703468
LKMJ01012301
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1436
1509
+
His
GTG
[ENA]
¢þ
>WENV170703567
LKMJ01013793
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2949
3024
+
His
GTG
[ENA]
¢þ
>WENV170703571
LKMJ01013863
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
116
189
+
His
GTG
[ENA]
¢þ
>W1910006869
BBMO01000001
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
684326
684254
-
His
GTG
[ENA]
¡û
>W1910006917
BBMP01000022
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
567900
567973
+
His
GTG
[ENA]
¡û
>W1910226700
FMZP01000011
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
71087
71015
-
His
GTG
[ENA]
¡û
>W1910226926
FNFE01000004
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
401788
401715
-
His
GTG
[ENA]
¡û
>W1910227137
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
41225
41152
-
His
GTG
[ENA]
¡û
>W1910228454
FNPC01000001
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
485002
485076
+
His
GTG
[ENA]
¡û
>W1910228508
FNQT01000001
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
1029665
1029592
-
His
GTG
[ENA]
¡û
>W1910229341
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
213480
213407
-
His
GTG
[ENA]
¡û
>W1910229370
FNWU01000004
Euryarchaeota
Halopenitus malekzadehii IBRC-M10418 [FNWU]
145062
145134
+
His
GTG
[ENA]
¡û
>W1910229823
FOFD01000006
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
99968
99893
-
His
GTG
[ENA]
¡û
>W1910229905
FOIC01000008
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
96156
96084
-
His
GTG
[ENA]
¡û
>W1910229938
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
902600
902673
+
His
GTG
[ENA]
¡û
>W1910230237
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
2762
2689
-
His
GTG
[ENA]
¡û
>W1910230436
FORO01000005
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
34693
34620
-
His
GTG
[ENA]
¡û
>W1910340497
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
850840
850913
+
His
GTG
[ENA]
¡û
>W1910340557
FTNR01000010
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
17401
17328
-
His
GTG
[ENA]
¡û
>W1910568497
JDTG01000006
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
176410
176483
+
His
GTG
[ENA]
¡û
>W1910569088
JHUT02000014
Euryarchaeota
Natrinema mahii H13 [JHUT]
45101
45028
-
His
GTG
[ENA]
¡û
>W1910572721
JNCS01000007
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
28148
28075
-
His
GTG
[ENA]
¡û
>W1910575881
JROF01000012
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
26372
26299
-
His
GTG
[ENA]
¡û
>W1910583012
JXAN01000038
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
30546
30473
-
His
GTG
[ENA]
¡û
>W1910646120
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2761135
2761207
+
His
GTG
[ENA]
¡û
>W1910657565
MASN01000030
Euryarchaeota
Natrialba sp. SSL1 [MASN]
379177
379104
-
His
GTG
[ENA]
¡û
>W1910826101
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
1195130
1195057
-
His
GTG
[ENA]
¡û
>W1911434003
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1898196
1898123
-
His
GTG
[ENA]
¡û
>W1911572207
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
952727
952799
+
His
GTG
[ENA]
¡û
>W1911580803
PEND01000002
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
166155
166227
+
His
GTG
[ENA]
¡û
>W1911591324
PKKI01000008
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
93771
93844
+
His
GTG
[ENA]
¡û
>W1911709187
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
772012
771939
-
His
GTG
[ENA]
¡û
>W1911749406
QWGG01000003
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
474391
474463
+
His
GTG
[ENA]
¡û
>SRA1001258
SRR001060.9168
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
34
106
+
His
GTG
[SRA]
>W1911824338
QZWE01000011
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
86960
86887
-
His
GTG
[ENA]
¡û
>W1610000839
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
2346556
2346628
+
Pseudo
GTG
[ENA]
¡û
>W1610001032
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
422142
422215
+
His
GTG
[ENA]
¡û
>W1610003251
AFNT02000002
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
30137
30209
+
Pseudo
GTG
[ENA]
¡û
>W1610004044
AGFZ01000017
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
64065
63992
-
His
GTG
[ENA]
¡û
>W1610004086
AGIM01000004
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
226063
226136
+
His
GTG
[ENA]
¡û
>W1610004126
AGIN01000003
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
24839
24766
-
His
GTG
[ENA]
¡û
>W1610005312
AJRK01000024
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
3141
3214
+
His
GTG
[ENA]
¡û
>W1610005373
AJVG01000008
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
132921
132994
+
His
GTG
[ENA]
¡û
>W1610011724
AOHS01000032
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
35318
35245
-
His
GTG
[ENA]
¡û
>W1610011894
AOHW01000002
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
24701
24628
-
His
GTG
[ENA]
¡û
>W1610011985
AOHY01000009
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
31722
31795
+
His
GTG
[ENA]
¡û
>W1610012036
AOHZ01000043
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
37009
37082
+
His
GTG
[ENA]
¡û
>W1610012102
AOIA01000167
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
115848
115921
+
His
GTG
[ENA]
¡û
>W1610012115
AOIB01000014
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
153442
153515
+
His
GTG
[ENA]
¡û
>W1610012151
AOIC01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
89141
89214
+
His
GTG
[ENA]
¡û
>W1610012216
AOID01000047
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
45860
45933
+
His
GTG
[ENA]
¡û
>W1610012260
AOIE01000101
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
95162
95235
+
His
GTG
[ENA]
¡û
>W1610012322
AOII01000107
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
27819
27746
-
His
GTG
[ENA]
¡û
>W1610012359
AOIJ01000058
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
45255
45182
-
His
GTG
[ENA]
¡û
>W1610012370
AOIK01000003
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
28295
28222
-
His
GTG
[ENA]
¡û
>W1610012433
AOIL01000048
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
105628
105701
+
His
GTG
[ENA]
¡û
>W1610012477
AOIM01000035
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
189217
189290
+
His
GTG
[ENA]
¡û
>W1610012503
AOIN01000008
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
152576
152503
-
His
GTG
[ENA]
¡û
>W1610012573
AOIO01000038
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
78558
78485
-
His
GTG
[ENA]
¡û
>W1610012604
AOIP01000016
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
93638
93565
-
His
GTG
[ENA]
¡û
>W1610012691
AOIR01000055
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
32215
32142
-
His
GTG
[ENA]
¡û
>W1610012706
AOIS01000011
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
41162
41235
+
His
GTG
[ENA]
¡û
>W1610012754
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
139055
138982
-
His
GTG
[ENA]
¡û
>W1610012804
AOIU01000013
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
123331
123406
+
His
GTG
[ENA]
¡û
>W1610014413
AOLZ01000029
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
22695
22768
+
His
GTG
[ENA]
¡û
>W1610014484
AOMA01000171
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
22371
22298
-
His
GTG
[ENA]
¡û
>W1610014493
AOMB01000010
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
23442
23369
-
His
GTG
[ENA]
¡û
>W1610014587
AOMD01000023
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
46871
46798
-
His
GTG
[ENA]
¡û
>W1610014620
AOME01000051
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
387684
387757
+
His
GTG
[ENA]
¡û
>W1610014671
AOMF01000153
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
34045
33972
-
Pseudo
GTG
[ENA]
¡û
>W1610019020
ARPH01000004
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
566723
566650
-
His
GTG
[ENA]
¡û
>W1610021318
ATCR02000005
Euryarchaeota
haloarchaeon 3A1-DGR 3A1_DGR [ATCR]
195268
195343
+
Pseudo
GTG
[ENA]
¡û
>W1610024350
ATYM01000001
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
630930
631003
+
His
GTG
[ENA]
¡û
>W1610040536
BAFM01000003
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
188821
188894
+
His
GTG
[ENA]
¡û
>W1610046842
BBCV01000013
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
5801
5874
+
His
GTG
[ENA]
¡û
>W1610082979
CBMA010000025
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
29126
29199
+
His
GTG
[ENA]
¡û
>W1610083014
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
375758
375685
-
His
GTG
[ENA]
¡û
>W1610671393
LKCV01000386
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
1119
1046
-
His
GTG
[ENA]
¡û
>W1610682187
LKMM01000016
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
13577
13650
+
His
GTG
[ENA]
¡û
>W1610682543
LKNC01000053
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
9012
8939
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK