This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400572 (33 seq.)
>A171002609
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
214741
214812
+
Ala
TGC
-
¡û
>A171003942
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
227142
227213
+
Ala
TGC
-
¡û
>A171004405
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1933294
1933219
-
Ala
TGC
-
¡û
>A171005799
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1822695
1822766
+
Ala
TGC
-
¡û
>A171006163
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1977239
1977164
-
Ala
TGC
-
¡û
>A171006682
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
186565
186636
+
Ala
TGC
-
¡û
>A171006724
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
187242
187313
+
Ala
TGC
-
¡û
>A171006857
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2013801
2013872
+
Ala
TGC
-
¡û
>WENV180318475
OBKM01001191
[OBKM] metagenome; water
1247
1176
-
Ala
TGC
[ENA]
¢þ
>WENV180318793
OBKM01010941
[OBKM] metagenome; water
1103
1032
-
Ala
TGC
[ENA]
¢þ
>WENV170008898
APHM01013845
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
249
178
-
Ala
TGC
[ENA]
¢þ
>WENV170009243
APHM01021824
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
618
689
+
Ala
TGC
[ENA]
¢þ
>At0765
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2633932
2634003
+
Ala
TGC
[Ensembl]
¡û
>WENV170661076
JXWU01097549
[JXWU] soil metagenome; rice field; organic control Plot
172
243
+
Ala
TGC
[ENA]
¢þ
>WENV170680437
LFCJ01011328
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2864
2793
-
Ala
TGC
[ENA]
¢þ
>W1910175091
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
1400237
1400166
-
Ala
TGC
[ENA]
¡û
>W1910226721
FNBK01000002
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
326012
326083
+
Ala
TGC
[ENA]
¡û
>W1910228403
FNOF01000017
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
72030
72101
+
Ala
TGC
[ENA]
¡û
>W1910229691
FOCX01000004
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
295475
295546
+
Ala
TGC
[ENA]
¡û
>W1910229715
FOCX01000029
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
1642
1571
-
Ala
TGC
[ENA]
¡û
>W1910617613
LIUF01000006
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
161152
161081
-
Ala
TGC
[ENA]
¡û
>W1911749400
QWGG01000002
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
619625
619696
+
Ala
TGC
[ENA]
¡û
>W1610003646
AGCY01000458
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
618
689
+
Ala
TGC
[ENA]
¡û
>W1610012800
AOIU01000006
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
1830
1759
-
Ala
TGC
[ENA]
¡û
>W1610014135
AOLQ01000031
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
129
58
-
Ala
TGC
[ENA]
¡û
>W1610014183
AOLR01000014
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
31372
31443
+
Ala
TGC
[ENA]
¡û
>W1610014248
AOLS01000114
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
123
194
+
Ala
TGC
[ENA]
¡û
>W1610014285
AOLW01000042
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
427
356
-
Ala
TGC
[ENA]
¡û
>W1610014359
AOLX01000033
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
727
656
-
Ala
TGC
[ENA]
¡û
>W1610014383
AOLY01000013
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
1117
1046
-
Ala
TGC
[ENA]
¡û
>W1610061907
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2541044
2541115
+
Ala
TGC
[ENA]
¡û
>W1610061971
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
352477
352406
-
Ala
TGC
[ENA]
¡û
>W1610881029
LRHL01000027
Euryarchaeota
Haloarcula sp. K1 [LRHL]
957
1028
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK